Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1332 ATGAATTGCTTATGTGAGAAAGACTGTGGTCTATTTTCTTCTCATTCAACATCTCACTGTGTTCTTGGTTGCCCATCATGGGGGACTACTCAATCTGAAGTCCAACAATCATCTATGTCCAGAAGTTTGAGCTTGAAAGTGGATATTCTGCCACAACAATGCCACAAGAGCAAGACATTGGGTTTTCAATTCCAAGAACAGGATTCATCTTCAACTCAATGCACTGATCAATCTTATCCTGAAGTTGGTTCAGCACAATCTGGTCAAATTTCATTTCGGCATAGTTCTTCAACTTGTTCAACACTTAACAGAATTTGGGGAAAGAAGAGTATGGGATGTGGCATCAGGTCATTTATGGGGAGTCAGGATCCTCCACTACTGGATCAAGGCCAAACACTTGTAAGTAGATATTTCCTCTCAAGTTCTTGTGGACGGAAAATATATGCATATTTTTTCTTATATTTTGGGTTTCAGGCTCATATTTCATGTCACTATGCTGATCCATGCTATAGTAGCCTAATGGCTGCTGCATATGGTCCACAGTCCAAGATACCTCATCATGCCCAGCCAGTGGAAACTGCTTCTGTTCGAATTCCTCTTCCATTGGATGTTACAGAAGAACCCATATACGTGAATTCAAAGCAGTACCATGCTATTCTGAGGCGAAGACAGTATCGAGCAAAACTTGAAGCACATAACAAACACATCAAGAATCGGAAACCGTATCTTCACGAGTCGCGCCATCTACATGCATTGAAGAGAGCTAGAGGCGCTGGTGGACGGTTTCTCAATACTAAAAAACTCCAACAATCAAAGCTTGCTTCAGCAAATCTTCTTACTCGTGGCAATATTGCAGAAAACTATAGAGATGGTGCTGATGTGAATGTCACATAA 894 0.4116 MNCLCEKDCGLFSSHSTSHCVLGCPSWGTTQSEVQQSSMSRSLSLKVDILPQQCHKSKTLGFQFQEQDSSSTQCTDQSYPEVGSAQSGQISFRHSSSTCSTLNRIWGKKSMGCGIRSFMGSQDPPLLDQGQTLVSRYFLSSSCGRKIYAYFFLYFGFQAHISCHYADPCYSSLMAAAYGPQSKIPHHAQPVETASVRIPLPLDVTEEPIYVNSKQYHAILRRRQYRAKLEAHNKHIKNRKPYLHESRHLHALKRARGAGGRFLNTKKLQQSKLASANLLTRGNIAENYRDGADVNVT 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1332 297 ProSitePatterns NF-YA/HAP2 subunit signature. 210 230 IPR018362 GO:0003677|GO:0016602
Aed1g1332 297 Gene3D - 205 266 - -
Aed1g1332 297 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 23 275 IPR001289 GO:0003700|GO:0006355
Aed1g1332 297 ProSiteProfiles NF-YA/HAP2 family profile. 205 265 IPR001289 GO:0003700|GO:0006355
Aed1g1332 297 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 207 262 IPR001289 GO:0003700|GO:0006355
Aed1g1332 297 PRINTS CCAAT-binding transcription factor subunit B signature 239 262 IPR001289 GO:0003700|GO:0006355
Aed1g1332 297 PRINTS CCAAT-binding transcription factor subunit B signature 208 230 IPR001289 GO:0003700|GO:0006355
Aed1g1332 297 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 23 275 - -
Aed1g1332 297 SMART cbf3 204 265 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1332 Aed-Chr1 12439627 12441154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1332 14 271 CCAAT-HAP2 Transcription Factor Family AT1G17590 44.318 2.83e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Aed1g1332 CBFB_NFYA 2.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1332 K08064 - gmx:100803893 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1332 1 12439627 12441154 Aed1g1332 1 12439627 12441154 ECH
Aed1g1332 1 12439627 12441154 Aed2g0352 2 2375447 2380383 PCT