Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed1g1332 | ATGAATTGCTTATGTGAGAAAGACTGTGGTCTATTTTCTTCTCATTCAACATCTCACTGTGTTCTTGGTTGCCCATCATGGGGGACTACTCAATCTGAAGTCCAACAATCATCTATGTCCAGAAGTTTGAGCTTGAAAGTGGATATTCTGCCACAACAATGCCACAAGAGCAAGACATTGGGTTTTCAATTCCAAGAACAGGATTCATCTTCAACTCAATGCACTGATCAATCTTATCCTGAAGTTGGTTCAGCACAATCTGGTCAAATTTCATTTCGGCATAGTTCTTCAACTTGTTCAACACTTAACAGAATTTGGGGAAAGAAGAGTATGGGATGTGGCATCAGGTCATTTATGGGGAGTCAGGATCCTCCACTACTGGATCAAGGCCAAACACTTGTAAGTAGATATTTCCTCTCAAGTTCTTGTGGACGGAAAATATATGCATATTTTTTCTTATATTTTGGGTTTCAGGCTCATATTTCATGTCACTATGCTGATCCATGCTATAGTAGCCTAATGGCTGCTGCATATGGTCCACAGTCCAAGATACCTCATCATGCCCAGCCAGTGGAAACTGCTTCTGTTCGAATTCCTCTTCCATTGGATGTTACAGAAGAACCCATATACGTGAATTCAAAGCAGTACCATGCTATTCTGAGGCGAAGACAGTATCGAGCAAAACTTGAAGCACATAACAAACACATCAAGAATCGGAAACCGTATCTTCACGAGTCGCGCCATCTACATGCATTGAAGAGAGCTAGAGGCGCTGGTGGACGGTTTCTCAATACTAAAAAACTCCAACAATCAAAGCTTGCTTCAGCAAATCTTCTTACTCGTGGCAATATTGCAGAAAACTATAGAGATGGTGCTGATGTGAATGTCACATAA | 894 | 0.4116 | MNCLCEKDCGLFSSHSTSHCVLGCPSWGTTQSEVQQSSMSRSLSLKVDILPQQCHKSKTLGFQFQEQDSSSTQCTDQSYPEVGSAQSGQISFRHSSSTCSTLNRIWGKKSMGCGIRSFMGSQDPPLLDQGQTLVSRYFLSSSCGRKIYAYFFLYFGFQAHISCHYADPCYSSLMAAAYGPQSKIPHHAQPVETASVRIPLPLDVTEEPIYVNSKQYHAILRRRQYRAKLEAHNKHIKNRKPYLHESRHLHALKRARGAGGRFLNTKKLQQSKLASANLLTRGNIAENYRDGADVNVT | 297 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed1g1332 | 297 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 210 | 230 | IPR018362 | GO:0003677|GO:0016602 | |
Aed1g1332 | 297 | Gene3D | - | 205 | 266 | - | - | |
Aed1g1332 | 297 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 23 | 275 | IPR001289 | GO:0003700|GO:0006355 | |
Aed1g1332 | 297 | ProSiteProfiles | NF-YA/HAP2 family profile. | 205 | 265 | IPR001289 | GO:0003700|GO:0006355 | |
Aed1g1332 | 297 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 207 | 262 | IPR001289 | GO:0003700|GO:0006355 | |
Aed1g1332 | 297 | PRINTS | CCAAT-binding transcription factor subunit B signature | 239 | 262 | IPR001289 | GO:0003700|GO:0006355 | |
Aed1g1332 | 297 | PRINTS | CCAAT-binding transcription factor subunit B signature | 208 | 230 | IPR001289 | GO:0003700|GO:0006355 | |
Aed1g1332 | 297 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR | 23 | 275 | - | - | |
Aed1g1332 | 297 | SMART | cbf3 | 204 | 265 | IPR001289 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed1g1332 | Aed-Chr1 | 12439627 | 12441154 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed1g1332 | 14 | 271 | CCAAT-HAP2 Transcription Factor Family | AT1G17590 | 44.318 | 2.83e-46 | 157 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | NF-YA | Aed1g1332 | CBFB_NFYA | 2.8e-25 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed1g1332 | K08064 | - | gmx:100803893 | 361.303 |