Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1325 ATGGAATACCCTTTTTCCCCAAAGGAAAGAGTAATTGGGGATTGGCAATCTTCTGGAGCTCAGTTAGAGGGATCAGAATCATTAGATGGCAGAATGAACAATTCAATATCAGAGGATATGCCCAGTAGCTTTTCTGAGCTCTTGAACTTTGATACTTATGCTGGTTTGTGCAACAGCCCATCCATAACAGATCAGATTTTGGCTAATGAGCTTCCATCATTTGCTTCATTACCATATCCATTGCCAGATGGATTCAATCTAGTCCAACAGAACAGTGGGCAATGCTGTATGTCAGGAGTTGGCAGAAATAACAATGATATGGGAAGCTCTCCCATTTATGGGGCAAAAGTTGTGTGTCAGCAAATGGACAACCTACTTGGTTTTGTAAACGACACAACTGAAGCAAATAACTCAAATTCTAAGCTAAAAATTAATAGCTCTTCTCAACATCTTAATCACTCTGATACAGGCAATTATATGATGTCTAGGCCAACTGGTGTGTCACTTGATGAGAGAATGCTGAGGGCTTTGTCCTTCTTTAAGGAATCAGCTGGTGGGGGAATATTGGCACAAGTTTGGGTACCCATAAGGCATGGTGATCAGTTCATCTTAAGCACAAGTGAGCAACCTTATTTGCTAGATCAGATGCTCGCAGGGTATCGTGAAGTGTCCAGGGCATTTACATTTTCTGCAGAAGGAAAATCTGGTTGTGTCTTAGGACTTCCTGGTCGTGTGTTTATCTCCAATGTTCCTGAGTGGACTTCAAATGTTGGTTATTACAGTGTGAGTGAGTACTTAAGGTTTGAGCATGCAATTAATCACAAGGTTCGTGGATCAATTGCATTTCCCATATTTGATCTGCACTCTGAATTCCCATGCTGTGCTGTACTGGAACTTGTCACTACAAAGGAAAAGCCAGATTTTGACAGAGAAATGGAAATTGTTTGTCGTGCACTCCAGCTTGTAAATTTAAGGACTGCCAAGCCTCTCCGATGTCTTCCCCAGTGTCTTTCAAACAACAAAAAAGCTACTTTGACTGAGATAGTTGATGTGTTACGATCTGTCTGTCATGCACATAGATTACCGCTGGCACTGACATGGATTCCCTGTTGTTACACTGAGTGCTCAAGAGGTGAAGCTTCAAGGATACGAATTAAAGGGGGTCACTCAACTTCTAGTGGAAAAAGCATACTGTGCCTTGAAGAATCTGCTTGCTATATAACTGATAGAGCAATGACAGGATTTGTCCGTGCATGCATGGAACATCATCTTGAGGAAGGGAAAGGTATAGCTGGGAAAGCTCTTCAATCAAATCATCCTTTCTTCTATCCTGATGTGAAGACATATGATATTAGTGAATATCCACTTGCCCATCATGCACGCAAGTATAATTTGAATGCTGCAGTTGCAATTAGGCTAAGGAGTACTTATACTAATGATGATGATTACATATTGGAATTCTTTCTGCCCGTCAATATAAGAGGCAGTTCAGAGCAGCAACTTTTATTAGACAACCTCTCAGGTACCATGCAGAAAATTTGTAGTAGTTTGAGGACAGTTTCAGATGCTGAAATATCAGGAATAGAAAGCTCACCAATGGGGTTTGGAAAGAAAAATGCCCCCAGTTTGTTTCCTTTGTCAAGTAGAAACTCTGAAATACCATTAACAAATGGTGACTGTGATTCTGTCCAGAAGATGTCATTGAAGGAAGCTAACCTAAGAGACAATGTACTTGAGCCTTCTCCTAACCAGGAAAGAAATGGATCAAAAAGACATGTCCAGAAAAATAGAAGTACATCAGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTGAAGGATGCTGCAAAAAACATTGGTGTTTGCCCAACAACTTTGAAAAGGATATGCAGGCAACATGGAATTCCAAGGTGGCCATCCCGGAAGATTAATAAAGTGAATCGATCATTGAAGAAAATACAGACCATGCTCGACTCTGTCCAGGGTGTGGAAGGAGGGTTGAAGTTTGATCCCTCTATGGGGGCATTTGTGGTAGGAGGGTCAATCATCCAGGAAATTGATGCTCATAAAAGTCCTGTGTTTCCTGAGAAAAGTTCTATAAAAGGCCATGTGCCTGTTACACAAGATGCAGTCTCTGTACCACCTGTACCTTGTAATGAAGGTGAGAAATTTTCAATTAAGTTGGAGGAAAAATTGAAGAAAGCCAATGTTTCTTCAGTTGATTGCAGTGAAGATTCAAAATCAATGGCAATTGATGACAGGCCGTGCCAGTTGGCAAGCCTTTGCACCAAGTTGCAGGATTGTCCCGAACAAGCTTGTTTGGGTTCTGTTTTTGCAAAAGACCAGGATAAATGTATTCTGAACAAGGGTGGCTTGAGAGTAGAATTTAAACGCAATATTATTGGCCAGAATTCAAAATCTTTGATTGGTGACGAGATGGACATTGGTGTAGATGGGGATGTTGAACCTAACCACCCTACTTCATCAAGCTTGACAGACTCATCTAATGACTCTGGTTCAATGATGCATAGCAGTTCATCAGATTCTCAGAGCTTTGAGAATCAGGATCAGTCCAATGTCAAATCAACCATCGTTGATAGTGGGTTGAAACTAATTGTCAAAGCTACCTATAGAGAAGACACCATTCGTTTCAAGTTTGATCCATCGGTGGGTTGTTTCAGGCTATATGAAGAAGTTGCAGCAAGATTCAAACTACAAAATGGGTCATTCCAGCTCAAATATCTCGATGATGAAAAGGAATGGGTGATGTTGGTGAATGATGCTGATTTGCAGGAGTGTATAGAAATATTGGATGATATGGGTACACATAACGTCAGGTTCCTTGTTCGTGATATGCCTTTCGTTTTAAGCAGTTCTGGCAGTAGCAATAGCTACTTGGGAGGCAGCTCATAG 2928 0.4095 MEYPFSPKERVIGDWQSSGAQLEGSESLDGRMNNSISEDMPSSFSELLNFDTYAGLCNSPSITDQILANELPSFASLPYPLPDGFNLVQQNSGQCCMSGVGRNNNDMGSSPIYGAKVVCQQMDNLLGFVNDTTEANNSNSKLKINSSSQHLNHSDTGNYMMSRPTGVSLDERMLRALSFFKESAGGGILAQVWVPIRHGDQFILSTSEQPYLLDQMLAGYREVSRAFTFSAEGKSGCVLGLPGRVFISNVPEWTSNVGYYSVSEYLRFEHAINHKVRGSIAFPIFDLHSEFPCCAVLELVTTKEKPDFDREMEIVCRALQLVNLRTAKPLRCLPQCLSNNKKATLTEIVDVLRSVCHAHRLPLALTWIPCCYTECSRGEASRIRIKGGHSTSSGKSILCLEESACYITDRAMTGFVRACMEHHLEEGKGIAGKALQSNHPFFYPDVKTYDISEYPLAHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVNIRGSSEQQLLLDNLSGTMQKICSSLRTVSDAEISGIESSPMGFGKKNAPSLFPLSSRNSEIPLTNGDCDSVQKMSLKEANLRDNVLEPSPNQERNGSKRHVQKNRSTSEKNVSLSVLQQYFSGSLKDAAKNIGVCPTTLKRICRQHGIPRWPSRKINKVNRSLKKIQTMLDSVQGVEGGLKFDPSMGAFVVGGSIIQEIDAHKSPVFPEKSSIKGHVPVTQDAVSVPPVPCNEGEKFSIKLEEKLKKANVSSVDCSEDSKSMAIDDRPCQLASLCTKLQDCPEQACLGSVFAKDQDKCILNKGGLRVEFKRNIIGQNSKSLIGDEMDIGVDGDVEPNHPTSSSLTDSSNDSGSMMHSSSSDSQSFENQDQSNVKSTIVDSGLKLIVKATYREDTIRFKFDPSVGCFRLYEEVAARFKLQNGSFQLKYLDDEKEWVMLVNDADLQECIEILDDMGTHNVRFLVRDMPFVLSSSGSSNSYLGGSS 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1325 975 ProSiteProfiles PB1 domain profile. 875 957 IPR000270 GO:0005515
Aed1g1325 975 SMART PB1_new 875 957 IPR000270 GO:0005515
Aed1g1325 975 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 736 971 - -
Aed1g1325 975 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 7 735 - -
Aed1g1325 975 MobiDBLite consensus disorder prediction 17 36 - -
Aed1g1325 975 MobiDBLite consensus disorder prediction 18 36 - -
Aed1g1325 975 MobiDBLite consensus disorder prediction 828 864 - -
Aed1g1325 975 Gene3D - 874 955 - -
Aed1g1325 975 MobiDBLite consensus disorder prediction 572 602 - -
Aed1g1325 975 CDD PB1_NLP 876 956 IPR034891 -
Aed1g1325 975 PANTHER PROTEIN NLP8 736 971 IPR045012 GO:0003700
Aed1g1325 975 SUPERFAMILY CAD & PB1 domains 875 957 - -
Aed1g1325 975 Pfam RWP-RK domain 603 651 IPR003035 -
Aed1g1325 975 ProSiteProfiles RWP-RK domain profile. 585 671 IPR003035 -
Aed1g1325 975 Pfam PB1 domain 878 956 IPR000270 GO:0005515
Aed1g1325 975 MobiDBLite consensus disorder prediction 818 864 - -
Aed1g1325 975 PANTHER PROTEIN NLP8 7 735 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1325 Aed-Chr1 12395934 12402427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1325 1 972 NLP Transcription Factor Family AT2G43500 48.882 0.0 806
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Aed1g1325 PB1 2.9e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1325 - - gmx:100804426 1647.87