Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1318 ATGCACCGAACCAACCACAACCACAGCCACACGTCCACAAGCCGTTCCTCGGACTCAACAAGTGAGCAGCCTACACATAGTCATGAAGACGGAAAATGGGCCCCGAAGCTTCTGAGAGAGTGCGCAAAAGCGATATCAGAGAGAGACTCTAACACAACTCACCATCTTCTTTGGATGCTTAACGAGCTTGCTTCACCTTATGGCGATTGCGATCAGAAACTCGCTTCTTACTTCTTGCAAGCCTTGTTCTGCAGAGCCACCCAGTCCGGTCAGAGATGCTTTAAAACTCTTTCCTCCGTCGCTCACAACAATCACTCCTTTGACTCCGCCAGGAGGTTGATACTCAAGTTTCAAGAGGTCAGTCCTTGGACCACCTTCGGACACGTGGCCTCCAACGGTGCCATATTAGAGGCCTTGGAAGGTGAGCCCAAGCTCCACATCATCGACCTCAGCAACACTCTGTGCACGCAGTGGCCAACGCTTCTTGAAGCTTTGGCCACTCGTAACGATGAGACACCTCATCTTAAACTCACAGTCGTGGCGATTGCGGGATCGGTGATAAGGGAGGTTGGTCAACGGATGGAGAAGTTCGCCAGACTCATGGGCGTGCCCTTTGAATTCAACGTGATTAGTGGGCTAAGCCAGATCACCAAGGAAGGCTTGGGGATTCAGGAAGATGAAGCTATAGCTGTGAACTGCGTTGGGGCGTTGAGAAGAGTGGAAGTTGAAGAGAGGGAAAACTTGATTCGCGTTTTTAAGTCTCTTGGTCCAAAAGTGGTGACCGTTGTTGAGGAAGAAGCTGATTTCTGCAGCTCGAGGGAAGATTTCGTGAGGTGCTTTGAAGAGTGTCTGAAGTTCTACTCTCTCTACTTCGAGATGCTGGAGGAGAGTTTCCCTCCCACGAGCAACGAGAGGTTGATGTTGGAGAGGGAGTGTTCGAGGAGCATAGTTAGGGTTTTGGCTTGCTGTGGTGATGGGGAAGAGGAGGATTCAGATTGCTGTGAGAGGAGGGAGAGAGGGATTCAATGGTGCGAGAGGCTGAGGAATGCGTTTTCGCCAAGTGGGTTCAGCGATGATGTGGTGGATGATGTGAAAGCATTGCTTAAGAGGTACCAACCAGGGTGGTCACTTGTGGTGTCTCAAGGAGATGATCATCTCTCTGGGATTTACTTGACATGGAAGGAGGAACCAGTGGTTTGGGCATCAGCATGGAAACCCTAG 1221 0.507 MHRTNHNHSHTSTSRSSDSTSEQPTHSHEDGKWAPKLLRECAKAISERDSNTTHHLLWMLNELASPYGDCDQKLASYFLQALFCRATQSGQRCFKTLSSVAHNNHSFDSARRLILKFQEVSPWTTFGHVASNGAILEALEGEPKLHIIDLSNTLCTQWPTLLEALATRNDETPHLKLTVVAIAGSVIREVGQRMEKFARLMGVPFEFNVISGLSQITKEGLGIQEDEAIAVNCVGALRRVEVEERENLIRVFKSLGPKVVTVVEEEADFCSSREDFVRCFEECLKFYSLYFEMLEESFPPTSNERLMLERECSRSIVRVLACCGDGEEEDSDCCERRERGIQWCERLRNAFSPSGFSDDVVDDVKALLKRYQPGWSLVVSQGDDHLSGIYLTWKEEPVVWASAWKP 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1318 406 MobiDBLite consensus disorder prediction 1 32 - -
Aed1g1318 406 PANTHER PROTEIN SHORT-ROOT-LIKE 6 405 - -
Aed1g1318 406 ProSiteProfiles GRAS family profile. 25 405 IPR005202 -
Aed1g1318 406 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 6 405 IPR005202 -
Aed1g1318 406 Pfam GRAS domain family 36 405 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1318 Aed-Chr1 12356664 12357884 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1318 30 406 GRAS Transcription Factor Family AT4G37650 52.868 6.01e-142 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aed1g1318 GRAS 9.5e-95 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1318 - - gmx:100818806 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1318 1 12356664 12357884 Aed1g1318 1 12356664 12357884 ECH
Aed2g0380 2 2591370 2593025 Aed1g1318 1 12356664 12357884 PCT