Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1314 ATGCCACCTCCTTTCAAATCCATGGAAGGCGAGGAGTGGGGAAGCCCCACCAATAACCTCTGGGTCGGAAATCTGCCGCCAGAGGTCACAGATTCCGATCTCATGGATATCTTCGCTCCGTATGGTTCTCTGGACACATTAATATCATCTTCCTCCCGCACCTTCGCTTTCGTGTTGTTCAGACGCGTAGAAGACGCTAAGGCAGCGAAATCCAATTTGCAAGGCGCGTCGCTGCGCGGGTTTCAAATCAGAATCGAGTTTGCCAGACCGGCAAAGCCGTGTAAACAATTGTGGGTGGGTGGTTGTAGTCACGCTGTTGCGAGAGAAGATTTGGAAGCGGAATTTTGCAAATTCGGTAAGATTGAGGATTTTAAGTTTTTCACAGACCGTGGTACTGCATTTGTTGAGTTTCTCAATCTGGATGATGCTACTCGGGCCATGAATGTCATGAACGGGAAACGGTTAGGTGGAGGCCAGATTTGCGTAGACTTCCTTCGATCACAATCTACGAGAAGAGATTTTTTGGTTGATCATGGGCAGTTTCAGGCTAGACCACAGCATTTACAACCTTCAATTGGGAGGAGTAGTCAACCCAGTAAAATTTTGTGGATAGGCTTTCCTCCTTCTTTTCAAATTGATGAACAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCTAGACATTATTCATTTGTTGAATTTAGAAGCATTGATGAGGCTCGGCGTGCCAAAGAGGGTCTTCAAGGACGACTTTTTAATGATCCTCGAATAACGATTATGTATTCAAGCAGTGAGCTGGCACCTGGAAAAGATTACCCTGGCTTTTATCCTGGAGGTAAAGGTCCTATACTTGATGGATTAGTTAATGAGCATCCATTTCGACCACTACAAACAGATGTAGTTGGTCATAATCGTCCTATGGTTCCAAATAATTTTCCTGGACCTGGTGGCATTACTGGAAATAATGTCCCAATGCGACCTTTTGGTCCTCAAGGTTTTGAACCTCTTGTCTCTGGTCCTGATTTTAATGAGATGGGTCCAAGCTGGAAAAGGCCATCACCTCCTGCCCCAGGAATGCTTCCTTCTCCCGTGTCTGGTATTAGGCCTCCTACAAGATCCACCCCTGGTGCATGGGATGCACTTGACACAAACCAATTTCAGAGAGACTCTAAACGTTCGAGGGTAGATGATGCTTTGCTCATTGGTGATGCTCCATTTCCATTAAGGAATATAGATGATCGTGTATTAGGACTAGAACAACCATTTGCAATTGATCCAGCTATTGATGGAGGTGGTTCTGGTCTAAAGAGTCACCTTGGTCCAGTCAGCACTAGGATCACATCTGGAGTACCTGGTTCTGTCCAACCTAATGTTGATCATACATGGCGTGGAATTATTGCAAAAGGGGGAACTCCTGTTTGTTGTGCTAGATGCGTGCCTATTGGAAAAGGGATAGGGACTGAGATTCCTGATGTGGTAGATTGTGCTGCTAGGACTGGATTGGATATGCTAACGAAACACTATGCTGATGCAATTGGCTTTGACATTGTTTTCTTTCTCCCTGATAGCGAAGAGGATTTTGCTTCTTACACTGAATTCCTTCGGTACCTCAAAGGAAAAAACCGTGCTGGTGTTGCCAAGTTTGTTGATAACACTACTTTATTTTTGGTACCACCTTCTGATTTCTTGACCAAGGTTTTGAAAGTCACAGGACCTGAACGTTTATATGGTGTAGTTCTTAAATTTCCATTAGTTCCAAGTAGCACATCTATGCAACAAGCAATGTATTTGCCTTCACCCTCTACTCAGTATATGCAACAGATTCCCCCTTCACAACCTGGGTATGGTTCAATCACTGTAAAGGAGGAACAGGTTTTACCTATGGATTATAACAGATTGTTGCATGAGGATTCTAAGCATCTGCCAAGACCACTTCATCCAGCTACAAGTGTCCCCCATTCAGCTCATTCTGTTCCTCCTTATTATGCTCCTACTTACACTGCTTCTGTATCCCAAGCTGGAGTTACATTGACACCTGAACTTATTGCAAGTTTAACTTCTTTACTCCCTGCAACTACACAATCATCAACCACTGGTGGCACAATGGGAGGAGTGGTTGGTCCTTCTACTGTGAAGCCACCTTTTCCTCTTGTTGTACCTAATGATGGAAATCAATCTCATTTGTGGAAACAAGATCAGCAAATTGCTGATCCATCTAGACATCCTCCTCAACAGTTTGGGAGTATTCATAATGCTCAATATCAACCTTATCCACCTCCATCTTCTACTAACCTCCCTGCTCAAGTGGTCTCTGGCAGTTCTTGTTTCCAAGATACTGCTTCCAGTCTTCAGCAGCTAGGTGCTGTTTCGTCTACACCCATGACTAATTTCATCATACCTCCTCAAAATGGACAGGTAGCTGTGTCGCCTCATGTCAGTCAACAGTATCAGGTGGAAGTCCCCCATGGCACTGAGAAAGGCTATGGAGTGGTTCAGGGAACAGATGCCTCTGTTTTATACAGTTCTAAGGCATTCCAGCAACCTAATAATTTTGTCTCCTCATCCAACCAAGTTGCCAATGCTGCTTCACAGCAACAATCTGTGATGCCCTATACAGTGGGCACAGCTAATTCAGGGCCCACAAATCAGCAACTTCAACCTGATTTATTTGGAGTTGGCCAGGCAGTGTCAGAATTGGAGGCTGATAAGAACCAGAGGTACCAGTCAACACTAGAGTTTGCTGCCAACCTTCTCCACCAGATACAACAACGGCAAACACAAGGAGGGCATGGGCCAGGAAATCAACAATAA 2838 0.4447 MPPPFKSMEGEEWGSPTNNLWVGNLPPEVTDSDLMDIFAPYGSLDTLISSSSRTFAFVLFRRVEDAKAAKSNLQGASLRGFQIRIEFARPAKPCKQLWVGGCSHAVAREDLEAEFCKFGKIEDFKFFTDRGTAFVEFLNLDDATRAMNVMNGKRLGGGQICVDFLRSQSTRRDFLVDHGQFQARPQHLQPSIGRSSQPSKILWIGFPPSFQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSIDEARRAKEGLQGRLFNDPRITIMYSSSELAPGKDYPGFYPGGKGPILDGLVNEHPFRPLQTDVVGHNRPMVPNNFPGPGGITGNNVPMRPFGPQGFEPLVSGPDFNEMGPSWKRPSPPAPGMLPSPVSGIRPPTRSTPGAWDALDTNQFQRDSKRSRVDDALLIGDAPFPLRNIDDRVLGLEQPFAIDPAIDGGGSGLKSHLGPVSTRITSGVPGSVQPNVDHTWRGIIAKGGTPVCCARCVPIGKGIGTEIPDVVDCAARTGLDMLTKHYADAIGFDIVFFLPDSEEDFASYTEFLRYLKGKNRAGVAKFVDNTTLFLVPPSDFLTKVLKVTGPERLYGVVLKFPLVPSSTSMQQAMYLPSPSTQYMQQIPPSQPGYGSITVKEEQVLPMDYNRLLHEDSKHLPRPLHPATSVPHSAHSVPPYYAPTYTASVSQAGVTLTPELIASLTSLLPATTQSSTTGGTMGGVVGPSTVKPPFPLVVPNDGNQSHLWKQDQQIADPSRHPPQQFGSIHNAQYQPYPPPSSTNLPAQVVSGSSCFQDTASSLQQLGAVSSTPMTNFIIPPQNGQVAVSPHVSQQYQVEVPHGTEKGYGVVQGTDASVLYSSKAFQQPNNFVSSSNQVANAASQQQSVMPYTVGTANSGPTNQQLQPDLFGVGQAVSELEADKNQRYQSTLEFAANLLHQIQQRQTQGGHGPGNQQ 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1314 945 Gene3D - 6 92 IPR012677 -
Aed1g1314 945 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 4 945 - -
Aed1g1314 945 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 90 IPR000504 GO:0003723
Aed1g1314 945 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 158 IPR000504 GO:0003723
Aed1g1314 945 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 84 IPR000504 GO:0003723
Aed1g1314 945 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 266 IPR000504 GO:0003723
Aed1g1314 945 PANTHER RNA RECOGNITION MOTIF-CONTAINING 4 945 - -
Aed1g1314 945 CDD RRM3_Spen 97 166 - -
Aed1g1314 945 SUPERFAMILY RNA-binding domain, RBD 16 171 IPR035979 GO:0003676
Aed1g1314 945 Gene3D - 93 193 IPR012677 -
Aed1g1314 945 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 273 IPR000504 GO:0003723
Aed1g1314 945 SMART rrm1_1 201 269 IPR000504 GO:0003723
Aed1g1314 945 SMART rrm1_1 19 86 IPR000504 GO:0003723
Aed1g1314 945 SMART rrm1_1 96 163 IPR000504 GO:0003723
Aed1g1314 945 Gene3D - 194 277 IPR012677 -
Aed1g1314 945 SUPERFAMILY RNA-binding domain, RBD 185 273 IPR035979 GO:0003676
Aed1g1314 945 MobiDBLite consensus disorder prediction 701 771 - -
Aed1g1314 945 CDD RRM3_Spen 20 89 - -
Aed1g1314 945 Pfam SPOC domain 466 582 IPR012921 -
Aed1g1314 945 Coils Coil 913 933 - -
Aed1g1314 945 MobiDBLite consensus disorder prediction 733 771 - -
Aed1g1314 945 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 167 IPR000504 GO:0003723
Aed1g1314 945 CDD RRM3_Spen 202 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1314 Aed-Chr1 12324155 12336737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1314 19 263 Eukaryotic Initiation Factors Gene Family AT4G34110 27.037 5.29e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1314 - - gmx:100806555 1639.4