Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1310 ATGCGACACTCAAAAGTACGTCCCAATGCACCTTCTGATGATCAATCACCCCAACTTGATCATGGAGGCTGGTCTAGGCGTGGTCGTGAATTTTGTGAGGCAAGAAGAGCGTTTCTAAACAGTTACCATTTGAGTTTGGAAGAAAGAAAAAACAATGGGAGCTTCAAGGAAAAGTTGAAGAAATCAGTGAGGGAGGTTAATGAAGCAGCAATTGGAGTTGTTTTGGGCATGCGTCGTGAGGTGTCCAAGAGAAGGGTGGTCATAAGGGTTTTTAGGGTCAAAATGTCTTCTCAATCGCTGGTTCTTGTTACCTTAAGATGTTTTATCCCATGGTTGAACAAAAGTGATGAGATTATTGAAAAAGTTGTTAGCCAAAGAAGACCAGGTTTTCGTTCTGTAGAAGGAAGAGAAGAGTTAATTAACATGAAAATTCAGTGTGATGTGTGTGAGAGAGCTCCAGCAACAGTGATTTGTTGCGCGGATGAGGCAGCTTTGTGTGCCAAATGTGACGTTGAAGTTCATGCTGCAAACAAGCTTGCAAGCAAGCATCAGAGGCTTCTTCTTCAATGTCTATCAAGCAAGCTTCCCAGATGTGACATTTGCCAAGACAAGCCAGCATTCATATTTTGTGTTGAAGACAGAGCACTCTTCTGTCAGGATTGTGATGAACCAATTCATTCAGCTGGAAGCCTTTCCGCGAACCACCAGCGCTTCCTTGCTACTGGTATCCGAGTGGCTTCGAGTTCCAATTGCACCAAAGACAATGAAAAAAGTCACTTGGAGCCTCCTAATAGGAATGCACAACAAGTTTCCGTGAAAGTTCCTCCTCAGCAAGTGCCTAGCTTCACATCCTCTTGGGCTGTTGATGACTTGTTGGAATTAACAGGCTTTGAATCACCTGAGAAAAAGGAATCTCTGCAGTTTGGAGAGCTGGAATGGCTTACGGATGTGGGTATTTTTGGTGAACAATTTGCTCAGGAAGCCTTGGCTGCAGCTGAAGTACCTCAGCTTCCAGTAACTCATAACGGTAGCAGTACTGTTCCTTCATACAGAACCTCCAAGTCCTACATGTCCCACAAAAAGCCTAGGATTGAAGTCCTAAATGATGATGATGATGATGAGTATTTTACTGTGCCTGATCTTGGCTAA 1149 0.4369 MRHSKVRPNAPSDDQSPQLDHGGWSRRGREFCEARRAFLNSYHLSLEERKNNGSFKEKLKKSVREVNEAAIGVVLGMRREVSKRRVVIRVFRVKMSSQSLVLVTLRCFIPWLNKSDEIIEKVVSQRRPGFRSVEGREELINMKIQCDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSSKLPRCDICQDKPAFIFCVEDRALFCQDCDEPIHSAGSLSANHQRFLATGIRVASSSNCTKDNEKSHLEPPNRNAQQVSVKVPPQQVPSFTSSWAVDDLLELTGFESPEKKESLQFGELEWLTDVGIFGEQFAQEALAAAEVPQLPVTHNGSSTVPSYRTSKSYMSHKKPRIEVLNDDDDDEYFTVPDLG 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1310 382 PANTHER B-BOX ZINC FINGER PROTEIN 24 142 382 - -
Aed1g1310 382 PANTHER B-BOX ZINC FINGER PROTEIN 22 142 382 - -
Aed1g1310 382 MobiDBLite consensus disorder prediction 1 25 - -
Aed1g1310 382 MobiDBLite consensus disorder prediction 361 382 - -
Aed1g1310 382 ProSiteProfiles Zinc finger B-box type profile. 141 188 IPR000315 GO:0008270
Aed1g1310 382 CDD Bbox1_BBX-like 146 188 - -
Aed1g1310 382 SMART bboxneu5 193 240 IPR000315 GO:0008270
Aed1g1310 382 SMART bboxneu5 141 188 IPR000315 GO:0008270
Aed1g1310 382 Gene3D Classic Zinc Finger 141 232 - -
Aed1g1310 382 ProSiteProfiles Zinc finger B-box type profile. 193 240 IPR000315 GO:0008270
Aed1g1310 382 CDD Bbox1_BBX-like 198 239 - -
Aed1g1310 382 Pfam B-box zinc finger 194 236 IPR000315 GO:0008270
Aed1g1310 382 Pfam B-box zinc finger 144 185 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1310 Aed-Chr1 12293985 12298043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1310 142 302 Orphan Transcription Factor Family AT1G06040 61.765 2.96e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Aed1g1310 zf-B_box 2.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1310 - - gmx:100797515 445.662