Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed1g1298 | ATGGATTCCGAGGACGATATGCATGACGCCAACGATGTTGAGTCCCTCGACGACGATTTCTACAGTGGCGAGACCGAAGATGCTCCCATGGATTACTACAGTGACTACGACGACGACGCCGCCGATGACTACTTCGACGATGCCGACGATTCTGACCGGATTGAGTCTCGTCGCCCCGAGCAAAATTTCACCGTATTGAGGGAATTGGATATCCGCCAAAGGCAGGAAGACGACATCAATAGAGTAGCCGCAGTTCTTTCCATACCGCGGGTTTCTGCCAGCATCCTACTTCGCCACTACAATTGGAGTGTTAGTAAGGTGCATGATGCTTGGTTTGCTGATGAAGATGAAGTTCGAAAGACAGTTGGTTTGTTGGACAAGTCAGTCCACAAATCCAGTCCTAGAGAGCTTACTTGTGGCATCTGTTTTGAAATGTATCCTCGGGTTGAATCTGCTGGTTGTGGCCACCCTTACTGCTTTTCATGCTGGGCAGGATATATTGGCACATCAATTAATGATGGTCCAGGATGTTTGGTGCTCAGATGTCCTGATCCCACTTGTGGTGTTGCTGTTGGTCAAAATATGATTGATCTTTTAGCATCTGATGAAGATAAAGAGAAGTATGACCGTTACCTTCTCAGGTCTTATATTGAAGACAATAAGAAGACCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGCAGTGGAAATTATGATGTATCTTGCTTCTGTTCATATAGCTTTTGCTGGAATTGCACAGAGGAGGCTCACCGTCCGGTGGACTGTGGCACTGTGTCAAAGTGGATTTTGAAAAATAGTGCAGAATCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGCAAGCGACCAATTGAGAAAAACCAAGGGTGCATGCATATGACATGTACTCCACCTTGTAAATTTGAGTTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGGACTGGTGGATTTTATGCTTGCAATCGTTATGAAACAGCTAAACAAGAGGGAGTGTATGATGAAACTGAAAGAAGAAGAGAAATGGCAAAGAATTCGTTGGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAACCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTACACCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACACACAGTGCCAGCCTGAATCACAGCTTAAGTTCATAACAGAGGCCTGGTTACAGATAGTTGAATGCAGGAGGGTGCTAAAGTGGACATATGCATATGGGTACTATTTACCTGAGCATGAACATGCTAAAAAACAGTTCTTTGAGTACTTACAAGGTGAGGCAGAATCTGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAATTACAGCTATTCCTCAATGCTGATGGCCCATCTAAAGAATTCAATGACTTTCGAACCAAACTAGCTGGATTGACCAGTGTGACTAGAAACTACTTCGAGAATTTGGTGAGGGCATTAGAGAATGGTTTATCTGATGTGGATAGTAATGGAGCTGCTTCCAGCAAAGCAACGAGCTCAAAAAATGCTGCAGGGAGCAGCAAGGGGAGAGGTGGAAGAGGAAAAGCGACTAATCATTGGTCCTGTGAACACTGTACCTATGCAAATGCAAGGTCTGCCACCACATGCCAAATTTGCAATCAACAGCGTCGATGA | 1731 | 0.4471 | MDSEDDMHDANDVESLDDDFYSGETEDAPMDYYSDYDDDAADDYFDDADDSDRIESRRPEQNFTVLRELDIRQRQEDDINRVAAVLSIPRVSASILLRHYNWSVSKVHDAWFADEDEVRKTVGLLDKSVHKSSPRELTCGICFEMYPRVESAGCGHPYCFSCWAGYIGTSINDGPGCLVLRCPDPTCGVAVGQNMIDLLASDEDKEKYDRYLLRSYIEDNKKTKWCPAPGCEYAVTFDAGSGNYDVSCFCSYSFCWNCTEEAHRPVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQEGVYDETERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQLFLNADGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGAASSKATSSKNAAGSSKGRGGRGKATNHWSCEHCTYANARSATTCQICNQQRR | 576 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed1g1298 | 576 | Gene3D | - | 264 | 519 | - | - | |
Aed1g1298 | 576 | SUPERFAMILY | RING/U-box | 287 | 335 | - | - | |
Aed1g1298 | 576 | SUPERFAMILY | Ran binding protein zinc finger-like | 549 | 575 | IPR036443 | - | |
Aed1g1298 | 576 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
Aed1g1298 | 576 | SUPERFAMILY | RING/U-box | 206 | 275 | - | - | |
Aed1g1298 | 576 | Pfam | Ariadne domain | 355 | 516 | IPR045840 | - | |
Aed1g1298 | 576 | ProSiteProfiles | TRIAD supradomain profile. | 135 | 346 | IPR044066 | - | |
Aed1g1298 | 576 | SMART | zf_4 | 550 | 574 | IPR001876 | - | |
Aed1g1298 | 576 | ProSitePatterns | Zinc finger RanBP2-type signature. | 552 | 571 | IPR001876 | - | |
Aed1g1298 | 576 | MobiDBLite | consensus disorder prediction | 520 | 538 | - | - | |
Aed1g1298 | 576 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 15 | 533 | - | - | |
Aed1g1298 | 576 | SUPERFAMILY | RING/U-box | 134 | 218 | - | - | |
Aed1g1298 | 576 | SMART | ibrneu5 | 206 | 268 | IPR002867 | - | |
Aed1g1298 | 576 | SMART | ibrneu5 | 281 | 342 | IPR002867 | - | |
Aed1g1298 | 576 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 217 | IPR013083 | - | |
Aed1g1298 | 576 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 15 | 533 | IPR031127 | GO:0004842|GO:0016567 | |
Aed1g1298 | 576 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - | |
Aed1g1298 | 576 | MobiDBLite | consensus disorder prediction | 520 | 549 | - | - | |
Aed1g1298 | 576 | Pfam | IBR domain, a half RING-finger domain | 206 | 268 | IPR002867 | - | |
Aed1g1298 | 576 | Pfam | IBR domain, a half RING-finger domain | 285 | 333 | IPR002867 | - | |
Aed1g1298 | 576 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 548 | 576 | IPR001876 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed1g1298 | Aed-Chr1 | 12216296 | 12222611 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed1g1298 | 17 | 575 | ARIADNE family | AT1G65430 | 70.951 | 0.0 | 822 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed1g1298 | K11968 | - | gmx:100810427 | 1089.72 |