Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1298 ATGGATTCCGAGGACGATATGCATGACGCCAACGATGTTGAGTCCCTCGACGACGATTTCTACAGTGGCGAGACCGAAGATGCTCCCATGGATTACTACAGTGACTACGACGACGACGCCGCCGATGACTACTTCGACGATGCCGACGATTCTGACCGGATTGAGTCTCGTCGCCCCGAGCAAAATTTCACCGTATTGAGGGAATTGGATATCCGCCAAAGGCAGGAAGACGACATCAATAGAGTAGCCGCAGTTCTTTCCATACCGCGGGTTTCTGCCAGCATCCTACTTCGCCACTACAATTGGAGTGTTAGTAAGGTGCATGATGCTTGGTTTGCTGATGAAGATGAAGTTCGAAAGACAGTTGGTTTGTTGGACAAGTCAGTCCACAAATCCAGTCCTAGAGAGCTTACTTGTGGCATCTGTTTTGAAATGTATCCTCGGGTTGAATCTGCTGGTTGTGGCCACCCTTACTGCTTTTCATGCTGGGCAGGATATATTGGCACATCAATTAATGATGGTCCAGGATGTTTGGTGCTCAGATGTCCTGATCCCACTTGTGGTGTTGCTGTTGGTCAAAATATGATTGATCTTTTAGCATCTGATGAAGATAAAGAGAAGTATGACCGTTACCTTCTCAGGTCTTATATTGAAGACAATAAGAAGACCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGCAGTGGAAATTATGATGTATCTTGCTTCTGTTCATATAGCTTTTGCTGGAATTGCACAGAGGAGGCTCACCGTCCGGTGGACTGTGGCACTGTGTCAAAGTGGATTTTGAAAAATAGTGCAGAATCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCCAAGTGCAAGCGACCAATTGAGAAAAACCAAGGGTGCATGCATATGACATGTACTCCACCTTGTAAATTTGAGTTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGGACTGGTGGATTTTATGCTTGCAATCGTTATGAAACAGCTAAACAAGAGGGAGTGTATGATGAAACTGAAAGAAGAAGAGAAATGGCAAAGAATTCGTTGGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAACCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTACACCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACACACAGTGCCAGCCTGAATCACAGCTTAAGTTCATAACAGAGGCCTGGTTACAGATAGTTGAATGCAGGAGGGTGCTAAAGTGGACATATGCATATGGGTACTATTTACCTGAGCATGAACATGCTAAAAAACAGTTCTTTGAGTACTTACAAGGTGAGGCAGAATCTGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAATTACAGCTATTCCTCAATGCTGATGGCCCATCTAAAGAATTCAATGACTTTCGAACCAAACTAGCTGGATTGACCAGTGTGACTAGAAACTACTTCGAGAATTTGGTGAGGGCATTAGAGAATGGTTTATCTGATGTGGATAGTAATGGAGCTGCTTCCAGCAAAGCAACGAGCTCAAAAAATGCTGCAGGGAGCAGCAAGGGGAGAGGTGGAAGAGGAAAAGCGACTAATCATTGGTCCTGTGAACACTGTACCTATGCAAATGCAAGGTCTGCCACCACATGCCAAATTTGCAATCAACAGCGTCGATGA 1731 0.4471 MDSEDDMHDANDVESLDDDFYSGETEDAPMDYYSDYDDDAADDYFDDADDSDRIESRRPEQNFTVLRELDIRQRQEDDINRVAAVLSIPRVSASILLRHYNWSVSKVHDAWFADEDEVRKTVGLLDKSVHKSSPRELTCGICFEMYPRVESAGCGHPYCFSCWAGYIGTSINDGPGCLVLRCPDPTCGVAVGQNMIDLLASDEDKEKYDRYLLRSYIEDNKKTKWCPAPGCEYAVTFDAGSGNYDVSCFCSYSFCWNCTEEAHRPVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQEGVYDETERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQLFLNADGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGAASSKATSSKNAAGSSKGRGGRGKATNHWSCEHCTYANARSATTCQICNQQRR 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1298 576 Gene3D - 264 519 - -
Aed1g1298 576 SUPERFAMILY RING/U-box 287 335 - -
Aed1g1298 576 SUPERFAMILY Ran binding protein zinc finger-like 549 575 IPR036443 -
Aed1g1298 576 MobiDBLite consensus disorder prediction 1 57 - -
Aed1g1298 576 SUPERFAMILY RING/U-box 206 275 - -
Aed1g1298 576 Pfam Ariadne domain 355 516 IPR045840 -
Aed1g1298 576 ProSiteProfiles TRIAD supradomain profile. 135 346 IPR044066 -
Aed1g1298 576 SMART zf_4 550 574 IPR001876 -
Aed1g1298 576 ProSitePatterns Zinc finger RanBP2-type signature. 552 571 IPR001876 -
Aed1g1298 576 MobiDBLite consensus disorder prediction 520 538 - -
Aed1g1298 576 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 533 - -
Aed1g1298 576 SUPERFAMILY RING/U-box 134 218 - -
Aed1g1298 576 SMART ibrneu5 206 268 IPR002867 -
Aed1g1298 576 SMART ibrneu5 281 342 IPR002867 -
Aed1g1298 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 217 IPR013083 -
Aed1g1298 576 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 533 IPR031127 GO:0004842|GO:0016567
Aed1g1298 576 MobiDBLite consensus disorder prediction 1 49 - -
Aed1g1298 576 MobiDBLite consensus disorder prediction 520 549 - -
Aed1g1298 576 Pfam IBR domain, a half RING-finger domain 206 268 IPR002867 -
Aed1g1298 576 Pfam IBR domain, a half RING-finger domain 285 333 IPR002867 -
Aed1g1298 576 ProSiteProfiles Zinc finger RanBP2 type profile. 548 576 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1298 Aed-Chr1 12216296 12222611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1298 17 575 ARIADNE family AT1G65430 70.951 0.0 822
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1298 K11968 - gmx:100810427 1089.72