Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1278 ATGGAGTCAGATCTCGAGCAGCAGCCGCCGGTGAATTCCTCGGGTCTGACTCGGTACCGATCGGCGCCGAGTTCTTATTTCTCGAACATCATTGACCGCGAGTTCTACGAGCACATTTTCAACCGTCCCTCCAGCCCCGAAACGGAGCGAGTCTTCTCACGCTTCATCAACAGCTTAAGCAGCGAAGAAGATTCGCTCCATCACCACAAACACGCAACTGATTCTTCTGCGGTTAAGGAAGAGCAGAGTATCAATATCAACGAGGAACACGTGGCGGCGCTACAGCAGAGCAATAATTATAATAACTCTTCTGCAGCTGCAGCTTCTCATAATAATTTCTACCAAAGCTCCTCCTCCAAACCACCCTTGCCGAATCAGAACCAGCCCTCAGGTATGGAACAAGGAACGTATTCAATGGGACTCAGACATAGCAGTGGGAATAATTCTACCCTTATCAGGCATAGTAGCTCACCCGCAGGACTATTTTCCCAAATTAACATCGAAAACGTTTATGCTAGTGTGAGAGGCATGGGTACTTTGGGGGCTGTTAACAACAGTGTCGAGGATGCGAAATTTTCTAGTTCGAGGAGGTTGAAGAATCAACCGAACTATTCTTCTTCGTCGGGGCGAATGTCGTCCATAGCTGAAATTGGGGACAAAGGGAATAGAGAAACTAGTCCAGACAATGAAGCTTTTGCTGCTGATGGTAACGATTTTATGACTGGTTTCCAAGTTGGTCAGTGGGATGATACTACTGACAGCGTTGGTGGTCTCAAAAGATTTAGAGATAACGATTCTAAACCATTTTCTGGCTTAAATGCGGCTGAGACTCAGAATGAAACGGGACAGTCTCCTGTTCCTTTGGCCCATCAATTGAGTTTGCCAAATACTTCAGCTGAAATGGCAGCCATTGAGAAGTTTCTGCAGTTTTCAGATTCTGTTAGAAGAACTAAAATTAGTGAGCGTATGAGGAAACTTCAAGATCTTGTCCCAAACATGGACAAGCAAACTAACACGGCAGATATGTTGGACTTGGCTGTGGATTACATCAAAGACCTTCAAAAGGAAGTTCAGACTGCCATGCTAAGTGTACGTGTTCACACGAGAAGCAACAATAACGGCAAAGAGGGTAGGGTGCCGGTGTGCAAGTGCAACTTCTTCAACGGTTGTGGAGGCGGGCGGGGGAGAATAATTGCTTATAAAAATGTGTTCGATAAAGCCAATTTGGTGGTTGTCATATCCATTTTTGGGGGCTCATTATCTCGAACCATTTATGAACGGTGGCTCTGCATTGTTGTGAGCATTTGTTTGGATGCTAGCTATCACCATTCACCAATTTGGATTCGACTACTCTAG 1356 0.4558 MESDLEQQPPVNSSGLTRYRSAPSSYFSNIIDREFYEHIFNRPSSPETERVFSRFINSLSSEEDSLHHHKHATDSSAVKEEQSININEEHVAALQQSNNYNNSSAAAASHNNFYQSSSSKPPLPNQNQPSGMEQGTYSMGLRHSSGNNSTLIRHSSSPAGLFSQINIENVYASVRGMGTLGAVNNSVEDAKFSSSRRLKNQPNYSSSSGRMSSIAEIGDKGNRETSPDNEAFAADGNDFMTGFQVGQWDDTTDSVGGLKRFRDNDSKPFSGLNAAETQNETGQSPVPLAHQLSLPNTSAEMAAIEKFLQFSDSVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKEVQTAMLSVRVHTRSNNNGKEGRVPVCKCNFFNGCGGGRGRIIAYKNVFDKANLVVVISIFGGSLSRTIYERWLCIVVSICLDASYHHSPIWIRLL 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1278 451 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 315 359 - -
Aed1g1278 451 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 315 359 - -
Aed1g1278 451 MobiDBLite consensus disorder prediction 62 77 - -
Aed1g1278 451 MobiDBLite consensus disorder prediction 1 20 - -
Aed1g1278 451 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 303 353 IPR011598 GO:0046983
Aed1g1278 451 MobiDBLite consensus disorder prediction 62 82 - -
Aed1g1278 451 MobiDBLite consensus disorder prediction 111 137 - -
Aed1g1278 451 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 314 363 IPR036638 GO:0046983
Aed1g1278 451 SMART finulus 302 359 IPR011598 GO:0046983
Aed1g1278 451 Gene3D - 309 373 IPR036638 GO:0046983
Aed1g1278 451 CDD bHLH_AtbHLH_like 314 358 IPR045239 -
Aed1g1278 451 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 13 314 - -
Aed1g1278 451 Pfam Helix-loop-helix DNA-binding domain 315 354 IPR011598 GO:0046983
Aed1g1278 451 MobiDBLite consensus disorder prediction 192 213 - -
Aed1g1278 451 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 13 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1278 Aed-Chr1 12068618 12072372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1278 4 358 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 35.606 3.67e-42 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed1g1278 HLH 1.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1278 - - gmx:100805812 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1278 1 12068618 12072372 Aed1g1278 1 12068618 12072372 ECH
Aed8g1422 8 18821957 18825616 Aed1g1278 1 12068618 12072372 ECH
Aed4g0409 4 2903782 2907446 Aed1g1278 1 12068618 12072372 ECH