Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1268 ATGGACCATGACAAGACTGGATGCCAAGCTCCCCCAGAAGGTCCTATATTGTGCATCAACAACTGCGGATTTTTTGGAAGTGCGGCTACCATGAACATGTGTTCTAAGTGCCACAAAGACATGATGCTGAAACAGGAGCAGGCACAGCTTGTAGCATCATCCATCGGGAATATTATGAATGGGTCATCAAGCAGCAGTGGAAATGAACTTGCCATTGCTACCAGTGTAGATGTTTCAGTCAATGCAGTAAAGCCTATAATTATCCCTGCACAGCCTTTAGTTGCTTCAGGTTCAGAGGAGAGTGATGAGGCAAAGCCCAAGGATGGTCCAAAAAGATGCAGCAACTGCAATAAGCGGGTTGGTTTGACAGGATTTAATTGTCGTTGTGGTAACCTTTTCTGTGCTGTACATCGCTACTCAGACAAACATAATTGCCTATTTGATTACCACACTGCTGCACGGGATGCCATAGCTAAAGCAAATCCGGTTGTCAAGGCTGAGAAACTTGATAAGGTCTAG 519 0.4509 MDHDKTGCQAPPEGPILCINNCGFFGSAATMNMCSKCHKDMMLKQEQAQLVASSIGNIMNGSSSSSGNELAIATSVDVSVNAVKPIIIPAQPLVASGSEESDEAKPKDGPKRCSNCNKRVGLTGFNCRCGNLFCAVHRYSDKHNCLFDYHTAARDAIAKANPVVKAEKLDKV 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1268 172 SUPERFAMILY AN1-like Zinc finger 96 167 IPR035896 -
Aed1g1268 172 Gene3D - 4 67 - -
Aed1g1268 172 Pfam AN1-like Zinc finger 113 149 IPR000058 GO:0008270
Aed1g1268 172 PANTHER ZINC FINGER AN1 DOMAIN STRESS-ASSOCIATED PROTEIN 1 172 - -
Aed1g1268 172 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Aed1g1268 172 Gene3D - 92 168 IPR035896 -
Aed1g1268 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 172 - -
Aed1g1268 172 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Aed1g1268 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
Aed1g1268 172 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Aed1g1268 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Aed1g1268 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1268 Aed-Chr1 12030199 12030717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1268 8 172 C2H2 Transcription Factor Family AT3G52800 43.713 3.40e-37 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1268 - - gmx:100781607 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1268 1 12030199 12030717 Aed1g1268 1 12030199 12030717 ECH
Aed4g0421 4 3002498 3003025 Aed1g1268 1 12030199 12030717 ECH