Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1266 ATGACTCATCCCTACTGCTCCAATAACGACTTCAATGCTTGGTTTGACCTCAATTCTCCATCCCTTTTTTCCACTACTTCTTCATCACCTTGCTCCATTAACCCACCATTTTATTACCATCATCAGTATATTCAATCTTCTCCCTCCTTTCCTCCTCCAAAAGAAGCACTTCCTCTCCTTAACCTAGGCCCTACTGCAAGAGGTGAAGATCTTGAATCTTCCTTTAGTGCCATGAAAGTCAGCAAAGAGAAGGAGAAGGAACTAAGCATGTCATCTATTAATTACTCTTTGGATGAAGAAACTGTCACGGTGGCTTTGCACTTAGGGCTTCCAACCACTGCTACTACTACTACTTCAGTCGACAAAGAAGAAAAAGCCACGGTTGCTTCTGATGTGTATTCTCCTACTAGAATTAACAAGGGCCAGTATTGGATCCCTACCCCTGCACAAATTCTGATCGGTCCAACACAGTTCTCATGCCCCCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGGCCAGAGTCTCTAAGGGGTACTCAACCAACAGCAATGCTTAGACTCCCTTGCTATTGCTGTGCACCAGGATGCAAGAACAACATTGACCATCCAAGAGCAAAGTCACTCAAAGACTTTAGGACCCTCCAAACCCATTACAAGAGAAAGCATGGAATCAAGCCTTTCATGTGTAGAAAATGTTGCAAAGCATTTGCTGTAAGAGGTGATTGGAGGACTCACGAGAAGAACTGTGGGAAGCTATGGTATTGCTCTTGTGGGTCCGATTTTAAGCACAAAAGATCTCTTAAAGATCATATCAAGGCATTTGGGAATGGACATAGAGCTTATGGAATCGACTCATGTCTTGATCAAGATGATGAACCCGGCTCTGAAATTGAGCAGGAAAATAATTAA 954 0.4298 MTHPYCSNNDFNAWFDLNSPSLFSTTSSSPCSINPPFYYHHQYIQSSPSFPPPKEALPLLNLGPTARGEDLESSFSAMKVSKEKEKELSMSSINYSLDEETVTVALHLGLPTTATTTTSVDKEEKATVASDVYSPTRINKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKSLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHRAYGIDSCLDQDDEPGSEIEQENN 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1266 317 PANTHER ZINC FINGER PROTEIN WIP2 19 317 IPR043584 GO:0003700|GO:0010468
Aed1g1266 317 SUPERFAMILY beta-beta-alpha zinc fingers 221 262 IPR036236 -
Aed1g1266 317 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 19 317 - -
Aed1g1266 317 Gene3D Classic Zinc Finger 157 180 - -
Aed1g1266 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 158 185 IPR013087 -
Aed1g1266 317 ProSitePatterns Zinc finger C2H2 type domain signature. 160 180 IPR013087 -
Aed1g1266 317 Gene3D Classic Zinc Finger 201 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1266 Aed-Chr1 12014500 12017564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1266 54 317 C2H2 Transcription Factor Family AT3G57670 59.677 3.65e-126 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed1g1266 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1266 - - gmx:100789416 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1266 1 12014500 12017564 Aed1g1266 1 12014500 12017564 ECH
Aed8g1392 8 18227551 18230215 Aed1g1266 1 12014500 12017564 ECH
Aed4g0426 4 3036436 3040064 Aed1g1266 1 12014500 12017564 ECH