Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1263 ATGCTTCATGCAACTTTGATCCTATTACTTGTCTGGCATATAGAATTCAAGATGAGTTGGAACCCACACTTGGAGGTCCATTACAATAACATCAGCTATCCCTACAGTACGGCAGGAAGCTTTATTGAATATGTTGAAGGTCTTACATACGAACATGTTAACTTCATTTTTTCTGGTGCCTCGCATGCTCAGGAGAGTTCATACCTTTCAACTACAAGCATTTACAAATCTGGGCTATCTGAACCAGAGAGTACCTCATACTATCGGGACAGTCATGGTTACGAGATGAATCATCATGAACCATTGATGGATGAGTATAGAAGGCCACCTCCGGAAAACTCTGCATCCATCAATGAACAGATGGCAACAATATACATAGAAAGGGAAGAAAGAGTACACAATGCCACACCAGATAGTTCTATTGAATGTTCACGAAGACATCATAATAGTTCCACTGATAATCAGGTCATTTGGGAAGACAATATTGATCCTGACAACATGACCTATGAGGTTGGACTGAAAGAACTACTTGAATTAGGTGAGACAGTTGGAACTCAGAGCCGCGGTCTCTCCCAAGAACAGATCTCATCGCTTCCAGTTTCAAAGTACAAGTGTGGCTGCTTCTTCTTCTGGAAGAAGTCACGCGACGAGAGATGCGTGATTTGCCAGATGGAATATAAAAGAGGGGACAAGAGGATCACTCTACCATGTAAACATGTCTATCATGCTGGCTGTGGGAACAAATGGCTTAGCATCAATAAGGCAAGCTTGTCCTATGTGTTACAGGGAGAAAAAAGAGCTCAAACTGTCGAGCTTTTGGATTATGGGAAGTTGCTGGTCTCAATCGATATCAAAGCAATATTTCAATCTTTCTCTTAA 879 0.4152 MLHATLILLLVWHIEFKMSWNPHLEVHYNNISYPYSTAGSFIEYVEGLTYEHVNFIFSGASHAQESSYLSTTSIYKSGLSEPESTSYYRDSHGYEMNHHEPLMDEYRRPPPENSASINEQMATIYIEREERVHNATPDSSIECSRRHHNSSTDNQVIWEDNIDPDNMTYEVGLKELLELGETVGTQSRGLSQEQISSLPVSKYKCGCFFFWKKSRDERCVICQMEYKRGDKRITLPCKHVYHAGCGNKWLSINKASLSYVLQGEKRAQTVELLDYGKLLVSIDIKAIFQSFS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1263 292 SUPERFAMILY RING/U-box 209 255 - -
Aed1g1263 292 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 18 255 IPR033276 GO:0004842|GO:0016567|GO:0046621
Aed1g1263 292 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 256 IPR013083 -
Aed1g1263 292 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 18 255 - -
Aed1g1263 292 Pfam Ring finger domain 218 253 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1263 Aed-Chr1 11969994 11974222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1263 22 254 C3H Transcription Factor Family AT3G63530 39.919 1.22e-48 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1263 K19045 - gmx:100793907 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1263 1 11969994 11974222 Aed1g1263 1 11969994 11974222 ECH