Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1259 ATGGCGACGTACCACCAAGCGTCCACAATCGAGGAAGTCCGAACCCTCTGGATTGGGGATTTACAATACTGGGTAGACGAAGCGTACCTGAGCCACTGTTTCGCGCACACGGGAGAGGTGGTATCAATAAAAATCATCCGCAACAAGATGACGGGGCAGCCCGAGGGCTACGGCTTCGTGGAGTTCGTCTCACACGGCGCCGCCGAGAGGGTTCTCCAGACCTACAACGGCACTCAAATGCCCGGCACCGAGCAGACCTTCAGGCTCAACTGGGCTTCCTTCGGCATCGGCGAGCGCAGGCCCGATGCCGGCCCTGAACACTCCATCTTCGTCGGCGATCTCGCCCCCGATGTCACCGATTATCTCCTCCAGGAAACCTTTCGCGCTCATTACCCTTCCGTTCGCGGCGCCAAGGTCGTCACCGACCCCAACACTGGCCGCTCCAAGGGTTATGGTTTCGTCAAGTTTTCTGATGAGAATGAACGGAACCGTGCCATGTCTGAAATGAACGGCGTTTATTGCTCCACCAGGCCCATGCGGATTAGTGCTGCTACGCCTAAGAAGACCACCGTTGCTTATGCTGCTGCACCCGCCGCGCCTGTACCCAAACCGCTTGCGTATCCTGTTCCGGCCTACACTGCGCCCGCTGTTCAACTTCAACCACCGGAGTATGATGTCAATAATACTACCGTTTTTGTTGGTAATTTGGATCTTAATGTCTCAGAGGAAGAGTTGAAGCAAAACTTTCTGCAATTTGGGGAAATTGTTTCTGTTAAATTTCAGCCTGGCAAGGGATGTGGTTTTGTTCAATTTGGAACTAGAGCATCTGCTGAAGAAGCCATTCAGAAGATGCAGGGAAAGATGATAGGCCAACAAGTGGTCCGGATTTCTTGGGGTAGGACTCCAACAGCTAGACAGGACTTACCTGGTGGCTGGGGATCACAGATGGATCCAAATCAATGGAGTGCCTACTATGGGTATGGACAGCAGGGTTATGAAGCCTATGCTTATGGGGCTGCTCACGATCCTTCACTGTATGCATATGGAGCATATGCTGGCTATGCACAATACCCCCAACAGGCTGAAGGTGCTCAAGACCTATCAGGTATGTCTGTTCCAACCATGGAACAGAGGGAGGAATTGTATGATCCCTTGGCAATGCCTGATGTTGATAAGTTAAATGCTGCATACCTCTCAGTACATGGAAGTGCCATTTTAGGGCGGTCACTCTGGCAAAAAACTTGTTCATCAACCTTACAGCAAGCTTAA 1269 0.5177 MATYHQASTIEEVRTLWIGDLQYWVDEAYLSHCFAHTGEVVSIKIIRNKMTGQPEGYGFVEFVSHGAAERVLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSDENERNRAMSEMNGVYCSTRPMRISAATPKKTTVAYAAAPAAPVPKPLAYPVPAYTAPAVQLQPPEYDVNNTTVFVGNLDLNVSEEELKQNFLQFGEIVSVKFQPGKGCGFVQFGTRASAEEAIQKMQGKMIGQQVVRISWGRTPTARQDLPGGWGSQMDPNQWSAYYGYGQQGYEAYAYGAAHDPSLYAYGAYAGYAQYPQQAEGAQDLSGMSVPTMEQREELYDPLAMPDVDKLNAAYLSVHGSAILGRSLWQKTCSSTLQQA 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1259 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 186 IPR000504 GO:0003723
Aed1g1259 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 94 IPR000504 GO:0003723
Aed1g1259 422 CDD RRM1_SECp43_like 15 95 - -
Aed1g1259 422 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 6 360 - -
Aed1g1259 422 CDD RRM3_NGR1_NAM8_like 228 299 - -
Aed1g1259 422 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 6 360 - -
Aed1g1259 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 294 IPR000504 GO:0003723
Aed1g1259 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 84 IPR000504 GO:0003723
Aed1g1259 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 174 IPR000504 GO:0003723
Aed1g1259 422 Gene3D - 216 307 IPR012677 -
Aed1g1259 422 SUPERFAMILY RNA-binding domain, RBD 99 189 IPR035979 GO:0003676
Aed1g1259 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 301 IPR000504 GO:0003723
Aed1g1259 422 Gene3D - 13 93 IPR012677 -
Aed1g1259 422 SUPERFAMILY RNA-binding domain, RBD 210 330 IPR035979 GO:0003676
Aed1g1259 422 Gene3D - 97 193 IPR012677 -
Aed1g1259 422 SUPERFAMILY RNA-binding domain, RBD 9 82 IPR035979 GO:0003676
Aed1g1259 422 CDD RRM2_SECp43_like 106 185 - -
Aed1g1259 422 SMART rrm1_1 108 182 IPR000504 GO:0003723
Aed1g1259 422 SMART rrm1_1 230 297 IPR000504 GO:0003723
Aed1g1259 422 SMART rrm1_1 15 90 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1259 Aed-Chr1 11945640 11948975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1259 13 332 Eukaryotic Initiation Factors Gene Family AT1G49760 24.695 7.82e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1259 - - gmx:100799421 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1259 1 11945640 11948975 Aed1g1259 1 11945640 11948975 ECH