Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1258 ATGGCTGCAACTCCTTCCAAATCCTTTGATACTCCCTCCAAACCCACACTCCGATCCCAATCCTCGCCCACCGTAACCCCCGACGACACTCCACAAACTTTACATCTTCGCAGATCCACGCGCGCCAAGTCCCTCCGCTTCGATGCTCCCAAGTCTCCCCATACACCTCACGAAATCTCGTTCACTACTCCTAATCGGAGGACGCGACGATCCATCGATTATGCCGAGCGTGAAGACAAACTCACAACAAGTAAGATTTCACCTAAAAAACCCGGTCCAGCTGTCGATGCATTGAAGAAGAAGAAGAAGAATGGGAAGGGTTCAATTGAAGTTTCCTTTGCTCCGGTAACTCCGGCTTCATCGGAAAAGACATCTACGAGGAAGAGGGAGAGGGAGTTGGGTTTTGTTACCAGAGCTAAAAGAGGGAAATCGGAGAATCGTACAAAATTGCCTGATAGGCGTGTGTATTATAAAAAAGTGGTTTACGATGGAGGTGAGTTTGAATTGGGGGGTGATGTTTATGTGAAGAGGAGAGAAGATGCGAGCTCCGATAACGAAGATCCCGAAATGGAGGAGTGTAGGATGTGTTTTTCCTCAAACGACGAGGTGGTCATGATTGAGTGTGATGATTGTTTGGGCGGGTTTCATTTGAAATGCTTGAGGCCTCCATTGAAGGACGTTCCTGAAGGGGATTGGATCTGTGGGTTCTGTGAGGCTCGTAAGATGGGTAAGGAAGTTCGGTTGCCAATGCCTCCGAAGGGTAAGAAACTAGTTAGGACTATGAGGGAGAAGCTCCTTTCCAGTGATTTGTGGGCTGCTCGTATTGAAAGCATATGGAAAGAGGTAGATGGCAACTATTGGTGTCGGGTGCGCTGGTATACAATCCCTGAAGAGACTTCTGTTGGACGGCAACCTCATAACCTTAAAAGGGAGCTATATCGAACTAATGATTTTGCTGACATTGAGATGGAATCTGTCCTTAGACATTGCTCTGTCATGATCCCCAAAGAATATGCTAAAGCTAGCAATGAGGGAGATGATGTTTTCTTATGTGAATATGAGTATGACATCCATTGGCACAGTTTCAAACGTCTTGCTGATATTGACAATGAAGCAGAGAATGGTGAAGAGACTGGCAGTGATGAAGACTGGAATGTTGACAAGGCATCAGAGTCTGATACTGATGAAGATGTTGATTATGAAGAAGAAAATATTAAATATGCACATTCTCAGCCATCAACAAACCATCCCTTAGCTGCAAATCTGCACAAGGGACGGTTCTTTGGACTTCAGAAGATAGGCACAAAAAGAATTCCGCAGCATGTAAGGTCTCACAAACAGACTGATCTTGAGAGAGCAAAGGCAACACTGTTGTTAGTGTCGCTGCCTAAATCTTTACCTTGTAGAAACAAAGAAATGGAGGAGATAACCACATTCATCAAAGGTGCTATTTCTGATGATCAATGCCTGGGGCGTTGCCTCTACATTCATGGTGTTCCGGGAACTGGCAAGACAATGAGTGTACTATCAGTAATGAGAAGTTTGAAGTCAGAAGTTGATGCAGGAAGCATCAAACCATACTCTTTTGTGGAGATTAATGGTCTGAAATTGGTGTCACCAGAGAATATTTACAAGGTTATATATGAGGCACTAAATGGACACAGGGTCGGCTGGAAAAAGGCTCTCCACTTGCTAAATGAGAGATTTGTAGAAGGAAAGAAAGCCAGAGATGAGGCTGACCAGCCATGTATTTTGCTTATTGATGAGCTTGATCTTCTAGTAACCAGAAACCAGTCGGTTCTGTACAATATTCTTGACTGGCCTACTAAGCCACATTCCAAGCTAATTGTCATAGGGATAGCAAATACTATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGCATACAGAGGCTTTGCTTTGGCCCATATAATTATCAGCAGCTTCAAGAAATCATTTCAAGTCGCCTCAAGGGGATTGATGTATTTGAAAAGCAAGCTGTAGAATTTGCTTCCAGAAAGGTTGCAGCAATCTCTGGAGATGCACGACGTGCTTTGGAGATATGCAGACGTGCGGCTGAGATAGCAGATTATCGTATGAAGAAGCTAATTTCTAATCCTGATTGTGTTACTGCAGGAAAGGGACTTATTGGAATGACAGATGTTGAAGCAGCCATTCAAGAAATGTTCCAAGCACCTCATATTCAAATGATGAAAAGCTGTTCCAGAGTTAGCAAAATTTTCCTAACAGCTATGGTGCACGAGCTTTATAATACAGGAATGGGGGAAACCACTTTTGAAAAGTTGGCAATGAGGGTTTCATGCTTCTGTACCAGCAACAGAGAAGAGGCTCCTGGATATGATACTCTCCTGCAAGTTGGCTGTAGGCTAGGTGAATGCAGGATTATTTTATGTGAAGCAGGTGCCAAGCACAAGTTGCAAAAATTGCAGCTTAATTTCCCGAGTGATGATGTCGCCTTTGCGCTGAGAGATTGCAAAGATCTACCTTGGCTGTCAAAGTATCTAATGTAG 2544 0.4395 MAATPSKSFDTPSKPTLRSQSSPTVTPDDTPQTLHLRRSTRAKSLRFDAPKSPHTPHEISFTTPNRRTRRSIDYAEREDKLTTSKISPKKPGPAVDALKKKKKNGKGSIEVSFAPVTPASSEKTSTRKRERELGFVTRAKRGKSENRTKLPDRRVYYKKVVYDGGEFELGGDVYVKRREDASSDNEDPEMEECRMCFSSNDEVVMIECDDCLGGFHLKCLRPPLKDVPEGDWICGFCEARKMGKEVRLPMPPKGKKLVRTMREKLLSSDLWAARIESIWKEVDGNYWCRVRWYTIPEETSVGRQPHNLKRELYRTNDFADIEMESVLRHCSVMIPKEYAKASNEGDDVFLCEYEYDIHWHSFKRLADIDNEAENGEETGSDEDWNVDKASESDTDEDVDYEEENIKYAHSQPSTNHPLAANLHKGRFFGLQKIGTKRIPQHVRSHKQTDLERAKATLLLVSLPKSLPCRNKEMEEITTFIKGAISDDQCLGRCLYIHGVPGTGKTMSVLSVMRSLKSEVDAGSIKPYSFVEINGLKLVSPENIYKVIYEALNGHRVGWKKALHLLNERFVEGKKARDEADQPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIISSRLKGIDVFEKQAVEFASRKVAAISGDARRALEICRRAAEIADYRMKKLISNPDCVTAGKGLIGMTDVEAAIQEMFQAPHIQMMKSCSRVSKIFLTAMVHELYNTGMGETTFEKLAMRVSCFCTSNREEAPGYDTLLQVGCRLGECRIILCEAGAKHKLQKLQLNFPSDDVAFALRDCKDLPWLSKYLM 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1258 847 SMART AAA_5 490 644 IPR003593 -
Aed1g1258 847 ProSitePatterns Zinc finger PHD-type signature. 193 237 IPR019786 -
Aed1g1258 847 Gene3D - 642 730 - -
Aed1g1258 847 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 131 842 - -
Aed1g1258 847 MobiDBLite consensus disorder prediction 373 398 - -
Aed1g1258 847 Pfam ATPase family associated with various cellular activities (AAA) 495 640 IPR003959 GO:0005524|GO:0016887
Aed1g1258 847 Gene3D - 446 641 IPR027417 -
Aed1g1258 847 ProSiteProfiles Zinc finger PHD-type profile. 190 240 IPR019787 -
Aed1g1258 847 CDD BAH_plant_2 214 366 - -
Aed1g1258 847 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 247 IPR013083 -
Aed1g1258 847 SMART BAH_4 225 366 IPR001025 GO:0003682
Aed1g1258 847 MobiDBLite consensus disorder prediction 1 33 - -
Aed1g1258 847 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 131 842 IPR020793 -
Aed1g1258 847 Pfam AAA lid domain 668 701 IPR041083 -
Aed1g1258 847 CDD AAA 471 647 - -
Aed1g1258 847 Gene3D - 257 393 IPR043151 -
Aed1g1258 847 SUPERFAMILY FYVE/PHD zinc finger 180 244 IPR011011 -
Aed1g1258 847 SMART PHD_3 192 238 IPR001965 -
Aed1g1258 847 Pfam PHD-finger 193 239 IPR019787 -
Aed1g1258 847 MobiDBLite consensus disorder prediction 69 85 - -
Aed1g1258 847 Pfam BAH domain 273 363 IPR001025 GO:0003682
Aed1g1258 847 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 459 711 IPR027417 -
Aed1g1258 847 ProSiteProfiles BAH domain profile. 249 366 IPR001025 GO:0003682
Aed1g1258 847 MobiDBLite consensus disorder prediction 1 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1258 Aed-Chr1 11937436 11946790 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1258 3 846 Core DNA Replication Machinery Family AT4G14700 62.137 0.0 1024
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed1g1258 AAA 5.9e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1258 K02603 - gmx:100798547 1535.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1258 1 11937436 11946790 Aed1g1258 1 11937436 11946790 ECH