Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1256 ATGAGGAAGCCTGCTACAGAGGCGTGTAGCAGTGGCAACAAAAACAATAGGAAGCTTAGAAAGGGGTTGTGGTCACCTGAAGAAGATGACAAGCTGATGAACTACATGCTAAACCATGGACAAGGGTGTTGGGGTGATGTGGCAAGAAATGCTGGCCTCCAAAGGTGTGGCAAGAGTTGTCGCCTTCGATGGATCAATTACTTGAGGCCTGATCTTAAGAGAGGTGCATTCTCAACCCAGGAAGAGGAACTCATCATCCACTTCCATTCCCTTCTTGGAAACAGATGGTCTCAAATAGCGGCGCGTTTGCCTGGGCGAACCGACAATGAAATAAAAAACTTTTGGAATTCAACGGTAAAGAAAAGAGTCAAGAACATGTCGTCCACGACCACAAGCGAGACCTCGTCTGAGCCTGAGTCTAGTAAAGACCTCATCAACATGAACATGAACATGAACATGGGAGGGTTTATGCCTACACAACTTGCAGAATTTGTGCCTATGTTTGGTTCATCTCCATCAACCACAGTTTTCAATACCATGATTAATGAAAGGTTGCCTATGCCACATGCATGGGAAAGTGAAGTTGACGTCAACACAGGTTATTTTTCAGAAAACGGAGTGTTTGGGAGTAGTGTAAATATCAACGGGGATATGTTTGTTCCTCGTGATCCCCTTGATGATCATAACCTGATGAGTAGCATCAGTAATTACTTTGATGACGACATAAATAGTATCCTTAATAACTGCAACATTGGCATAAGTAGTGATGAAAATAATAATAAGGCTGGGCATGGGGTGGAGAATTTGTTTCAACAAGAGTTAGCCACAGCCACAGGAGATCAATGGGACTTTGAGGAGTTGATGAAAGAGGCTTCCTACTTTCCGTTTCTTGATTTCTCATACTGA 906 0.4338 MRKPATEACSSGNKNNRKLRKGLWSPEEDDKLMNYMLNHGQGCWGDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSTQEEELIIHFHSLLGNRWSQIAARLPGRTDNEIKNFWNSTVKKRVKNMSSTTTSETSSEPESSKDLINMNMNMNMGGFMPTQLAEFVPMFGSSPSTTVFNTMINERLPMPHAWESEVDVNTGYFSENGVFGSSVNINGDMFVPRDPLDDHNLMSSISNYFDDDINSILNNCNIGISSDENNNKAGHGVENLFQQELATATGDQWDFEELMKEASYFPFLDFSY 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1256 301 Gene3D - 18 74 - -
Aed1g1256 301 CDD SANT 76 119 IPR001005 -
Aed1g1256 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 68 IPR017930 -
Aed1g1256 301 Gene3D - 76 147 - -
Aed1g1256 301 SUPERFAMILY Homeodomain-like 19 115 IPR009057 -
Aed1g1256 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Aed1g1256 301 CDD SANT 24 68 IPR001005 -
Aed1g1256 301 SMART sant 73 121 IPR001005 -
Aed1g1256 301 SMART sant 20 70 IPR001005 -
Aed1g1256 301 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
Aed1g1256 301 MobiDBLite consensus disorder prediction 1 21 - -
Aed1g1256 301 PANTHER MYB DOMAIN PROTEIN 55 193 301 - -
Aed1g1256 301 PANTHER MYB DOMAIN PROTEIN 55 1 206 - -
Aed1g1256 301 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Aed1g1256 301 Pfam Myb-like DNA-binding domain 21 68 IPR001005 -
Aed1g1256 301 Pfam Myb-like DNA-binding domain 74 117 IPR001005 -
Aed1g1256 301 PANTHER MYB TRANSCRIPTION FACTOR 193 301 - -
Aed1g1256 301 PANTHER MYB TRANSCRIPTION FACTOR 1 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1256 Aed-Chr1 11924410 11926251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1256 1 288 MYB Transcription Factor Family AT5G12870 46.284 3.79e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed1g1256 Myb_DNA-binding 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1256 K09422 - gmx:100799410 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1256 1 11924410 11926251 Aed1g1256 1 11924410 11926251 ECH