Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1243 ATGAATGAGGAGATGAGAGAAGCAAGGTTTGGAGATAATAAGATGCATAGAATAACATTAACAATTCTCCCTCTCGCTCATCCTTTAAAATCTCTTGTACCACTAAGACCAAGTTGTTGCAGCATACCCACCACCAGTTGTAAAATTAGCTATGGAATTGGTTTGAAGCAAAAAGCAGAAAGATGGAGCAATAGAAGAACGGTGGTAGTGAGAGTGAGAGCAGGAAGGCGCAGCGAGTCTCCGTATGAAGTATTGGGCGTGTCTCCATCCGCAACTGTCCACGAAATCAAAAAGGCGTATCGCAAACTTGCTCTCAAGTACCATCCCGATGTTAATAAAGAGGATAAGGCACAGGAGAAATTTATGAGGATAAAACATGCATACAATACATTGCTAAATTCTAGTTCCCGCAAAAAATATGATTCTGGAAGTCGAGGTTATGATTTTTCTCAAGGAAGCCAAAGTAGGAATGCACAGGCTGAAGAGGAGTTTTACGGACTAGAGGACTTCTTTAAGGATCTTCAGGAAGAATTCAGGAACTGGGAAGCAAATGCTGCTTCACAAGGAAAGCCGAAGAGTCTATGGGAGGAATTGGCGGAAATAGGAGAAGAATTTGTGGAGTTTCTTGAGAAAGAACTCAATATTACTGATCAAAATGAAGATTATAAAACTCCCGAGGGAGGTAATGCATCAAACTTTTCTGGGACGGAGACAGCAAGCAATAGCAGTCAAGGTGAAGCTAGCAAGGGAAACAGAAGCGTTGAGGATAACCTTGAGGAAATAGAAGCCACTCTAGCTCAGTTGAAAAAGGAATTAGGATTATAG 825 0.4145 MNEEMREARFGDNKMHRITLTILPLAHPLKSLVPLRPSCCSIPTTSCKISYGIGLKQKAERWSNRRTVVVRVRAGRRSESPYEVLGVSPSATVHEIKKAYRKLALKYHPDVNKEDKAQEKFMRIKHAYNTLLNSSSRKKYDSGSRGYDFSQGSQSRNAQAEEEFYGLEDFFKDLQEEFRNWEANAASQGKPKSLWEELAEIGEEFVEFLEKELNITDQNEDYKTPEGGNASNFSGTETASNSSQGEASKGNRSVEDNLEEIEATLAQLKKELGL 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1243 274 ProSitePatterns Nt-dnaJ domain signature. 121 140 IPR018253 -
Aed1g1243 274 SUPERFAMILY Chaperone J-domain 79 167 IPR036869 -
Aed1g1243 274 Coils Coil 251 271 - -
Aed1g1243 274 MobiDBLite consensus disorder prediction 216 258 - -
Aed1g1243 274 PRINTS DnaJ domain signature 116 136 IPR001623 -
Aed1g1243 274 PRINTS DnaJ domain signature 82 100 IPR001623 -
Aed1g1243 274 PRINTS DnaJ domain signature 100 115 IPR001623 -
Aed1g1243 274 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 55 272 - -
Aed1g1243 274 SMART dnaj_3 79 136 IPR001623 -
Aed1g1243 274 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 55 272 - -
Aed1g1243 274 CDD DnaJ 81 133 IPR001623 -
Aed1g1243 274 MobiDBLite consensus disorder prediction 220 251 - -
Aed1g1243 274 Pfam DnaJ domain 81 141 IPR001623 -
Aed1g1243 274 Gene3D DnaJ domain 77 187 IPR036869 -
Aed1g1243 274 ProSiteProfiles dnaJ domain profile. 80 144 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1243 Aed-Chr1 11850382 11853317 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1243 82 142 C2H2 Transcription Factor Family AT1G74250 40.299 4.76e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1243 - - gmx:100793601 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1243 1 11850382 11853317 Aed1g1243 1 11850382 11853317 ECH