Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1241 ATGAACTCGGACACAACGTCGTATTGGTGCTACAGCTGCACGCGCTTCGTTCACATCCAGGACCAGAACGACGTCGTTTGCCCCCGCTGCCAGGGCGGCTTCGTCGAAAAGGTCTCCGCCGGCCAATCTCCGGCAACAACGGTATCGGCAAGGCAGGGGTTCCGCCGCCGACGCCGCAACGCCGGGAGCCACTCTCCGTTCAACCCGGTGATCGTGCTCCGGGGACCGGGAGAGGACGAGGAGAGCAGCTTTGAGTTATACTACGACGGCTTCGACGGCGAGGGGCTCCGCCCGCTGCCGTCCACGATGTCGGAGTTTCTTCTCGGATCGGGATTCGACCGGTTGCTGGAGCAGGTTTCTCAGATCGAGATCAACGGCTTCGCGAGGGCGGAGAATCCGCCGGCGTCGAAGGCGGCGATAGAGTCAATGCCGACTGTGGAAATCACCGAGTCTCATGTCGCGACGGAGACGCACTGCGCCGTCTGCAAAGAAGCCTTCGAGCTAGGCGCGTTGGCGCGTGAGATGCCGTGCAAGCATCTCTATCACTCCGATTGCATTCTCCCGTGGCTCTCGATGCGAAACTCGTGTCCGGTGTGCCGCCACGAGTTGCCGTCGGAGCAAGCCGCATCAGAAAACAGAGTCGCCGGTCAGACCGAGGAGGAGGCAGTAGGGTTGACCATATGGAGGTTGCCGGGCGGCGGATTCGCCGTCGGGAGGTTCGCCGGCGAGAGCCAGTTGCCGGTGGTTTACACGGAGATGGAGAGTGGTGGGAATTCCAATGAAGGTTCGAGAAGGGTCTCTCTGGCGGTTGGAAGCGGCAGAGTTAGGGAAAGCCGTGGTGGATTTGGCAGAATTTTTCGTAATTTGTTTGGAAGAATTGGAGCTTTGACTAGAAGCCGTAGCCTTTCAACAACTTCACTCTTCAATAGAAGAAGTACTAGAACCTGGGTTTTGGGAAATTGA 963 0.5877 MNSDTTSYWCYSCTRFVHIQDQNDVVCPRCQGGFVEKVSAGQSPATTVSARQGFRRRRRNAGSHSPFNPVIVLRGPGEDEESSFELYYDGFDGEGLRPLPSTMSEFLLGSGFDRLLEQVSQIEINGFARAENPPASKAAIESMPTVEITESHVATETHCAVCKEAFELGALAREMPCKHLYHSDCILPWLSMRNSCPVCRHELPSEQAASENRVAGQTEEEAVGLTIWRLPGGGFAVGRFAGESQLPVVYTEMESGGNSNEGSRRVSLAVGSGRVRESRGGFGRIFRNLFGRIGALTRSRSLSTTSLFNRRSTRTWVLGN 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1241 320 CDD RING-H2_RNF126_like 159 200 - -
Aed1g1241 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 206 IPR013083 -
Aed1g1241 320 PANTHER OS05G0110000 PROTEIN 4 279 - -
Aed1g1241 320 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Aed1g1241 320 ProSiteProfiles Zinc finger RING-type profile. 159 200 IPR001841 -
Aed1g1241 320 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 4 279 - -
Aed1g1241 320 Pfam Ring finger domain 158 200 IPR001841 -
Aed1g1241 320 Pfam Protein of unknown function (DUF1117) 223 311 IPR010543 -
Aed1g1241 320 MobiDBLite consensus disorder prediction 46 69 - -
Aed1g1241 320 SMART ring_2 159 199 IPR001841 -
Aed1g1241 320 SUPERFAMILY RING/U-box 139 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1241 Aed-Chr1 11844990 11845952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1241 88 211 C3H Transcription Factor Family AT5G01980 41.129 8.17e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1241 - K11982 gmx:100784822 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1241 1 11844990 11845952 Aed1g1241 1 11844990 11845952 ECH
Aed9g1870 9 22265651 22266997 Aed1g1241 1 11844990 11845952 ECH