Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1233 ATGGAGTTTACTAAGTATTCCAACCCCATCCTCAGATACATAAGCGACATCCTGATGGATGAGGAAGACGACTTGGAGCGACAACCCTGCATGTTGCAGGAATGTTTGAGACTCCAGGCTGCTGAAAAAAACTTCCATGATGTCCTTCTTCATCAAAACCCTTCTCATGATGAAAATTTTGGTCGCATTCCTAGTTTTGAAAGCAACGACAGCTGCACCACTGATAATTCATGTGAGTCTGACTTGGGCAATGGTGTGAGTGAATTTGATTCTTCTTTCCTACAACTACAAACCCCTCTAGTTGATTCTCATGATGGAACCTGGAATGTCTTTAAGCCTCACACCATGCCGTCGATGGTGGAGAAGGGTTTTTCAGCTTTAGCACCAAGAGAAAAGAGAAGCCATCAGATGGATGATTATGCTTCTAATGAACAGGAAGGAAGAAGAGGCATCAAGGTTTCAGCCGTCTTTTCTGACAAGTCAGAGCCACCAGAGATCTTAGATGAGGTTCTGCTTTATCAAACCGGGAGAAGTAGTCAACAACTCTATAGTGCTCCTACCGAGCCATCACAAAGTGTTGATTTAGGGGGGTCCAACTCCAATGCAAAGGCAAAGGCAAAGGCAACACGTGCACGTTCCAAGAAAGTGTCCACCAACACGGACACAGCAGCTGTAGATTTATGGACCCTTCTGACTCAATGTGCACAGGCAGTGGCAAACTATGACCAAAGGAATGCAAATGATATACTCAACCAGATTAGGCAACACTCTTCACCTTCTGGGGATGGACTTCAGCGTTTGGCTCATTACTTTGCAAATGGCCTTCAGATAAGGTTGGCTGCTGGGACCCAACCATACACGCCCCTAGAAGTGGCAACTGCTTCGGATATGTTGAAAGCTTACAAACTTTTTGTTACATCCTCTCCTTTGCAGAGGTTGACTAATTACTTGACTACCAAGACAGTCATTAGTCTTGTGAAAAATGAGAGCAGCGTTCATATTATTGACTTTGGCATTTGCTATGGTTTTCAGTGGCCTTGCCTTATCAAAAAGCTCTCAGAAAGGCATGGTGGTCCTCCCAAGCTTCGAATAACAGGAATTGATCTTCCTCAGCCAGGTTTTCGGCCTAAAGAAAGGGTTGAGGAGACAGGGCGGCGTTTGGCAAACTTCTGCAACAAGTTCAATGTCCCCTTTGAATACAACTGTCTTGCACAGAAATGGGAAACTATAAGACTTGCAGATCTCAAGATAAACAAGAATGAAGTAACTGTTGTTAGCTGTTTCTACCGGCTGAAGAACCTGCCTGATGAAACTGTGGCAGTGAATTGTTCAAGAGATGCTTTCTTGAAGTTGATAAGGAGGATCAATCCAAACATCTTCATCCATGGAGTGGTGAATGGCACTTATAGTGCACCTTTTTTCCTGAGTAGGTTCAGGGAAGCACTCTACCACTTCTCATCACTGTTTGATGTGTATGAAGCCAATGTGCCGCGTGAAGACCCGCAAAGAGTGATGCTTGAGAAAGGGTTGTTTGGAAGGGATGCCATCAATGTAATAGCGTGTGAGGGAGCTGAGAGGGTTGAGAGACCGGAGACCTACAAGCAGTGGCAGGTTAGAAACCAGAGAGCTGGGTTCAAGCAAGCTCCTTTAGATCCTCAGTTGGTGGTTGATGCCAAAGATATTGTGAAGAGGGAATATCACAAAGATTTTGTAGTGGCTGAGCATGGCAAGTGGATTCTGCTGGGGTGGAAAGGCCGTATTCTAAATGCCATTTCTGCTTGGACTCCTGCTTAA 1794 0.4498 MEFTKYSNPILRYISDILMDEEDDLERQPCMLQECLRLQAAEKNFHDVLLHQNPSHDENFGRIPSFESNDSCTTDNSCESDLGNGVSEFDSSFLQLQTPLVDSHDGTWNVFKPHTMPSMVEKGFSALAPREKRSHQMDDYASNEQEGRRGIKVSAVFSDKSEPPEILDEVLLYQTGRSSQQLYSAPTEPSQSVDLGGSNSNAKAKAKATRARSKKVSTNTDTAAVDLWTLLTQCAQAVANYDQRNANDILNQIRQHSSPSGDGLQRLAHYFANGLQIRLAAGTQPYTPLEVATASDMLKAYKLFVTSSPLQRLTNYLTTKTVISLVKNESSVHIIDFGICYGFQWPCLIKKLSERHGGPPKLRITGIDLPQPGFRPKERVEETGRRLANFCNKFNVPFEYNCLAQKWETIRLADLKINKNEVTVVSCFYRLKNLPDETVAVNCSRDAFLKLIRRINPNIFIHGVVNGTYSAPFFLSRFREALYHFSSLFDVYEANVPREDPQRVMLEKGLFGRDAINVIACEGAERVERPETYKQWQVRNQRAGFKQAPLDPQLVVDAKDIVKREYHKDFVVAEHGKWILLGWKGRILNAISAWTPA 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1233 597 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 1 60 - -
Aed1g1233 597 MobiDBLite consensus disorder prediction 181 213 - -
Aed1g1233 597 Pfam GRAS domain family 229 595 IPR005202 -
Aed1g1233 597 ProSiteProfiles GRAS family profile. 218 595 IPR005202 -
Aed1g1233 597 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 103 596 - -
Aed1g1233 597 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 60 IPR005202 -
Aed1g1233 597 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 103 596 IPR005202 -
Aed1g1233 597 MobiDBLite consensus disorder prediction 181 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1233 Aed-Chr1 11807423 11809216 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1233 7 597 GRAS Transcription Factor Family AT5G59450 44.221 8.05e-169 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aed1g1233 GRAS 2.3e-112 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1233 - - aprc:113855970 904.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1233 1 11807423 11809216 Aed1g1233 1 11807423 11809216 ECH
Aed1g1233 1 11807423 11809216 Aed5g0386 5 2755300 2757315 ECH