Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1232 ATGGATCCAAACTTTGTTTACGAGTTTGATGAACCAAACCAGTGGGATCTCAACGGACACTACACCAACCTTTTCACTGATCCCCTTTTTTATCATTCCGATGTGAGCCCACTTGGTTTTTCACAGGATACAATCTCAAACTCGGAACCGTTTGTTTCCTCCTCCTCCGCCGCCGCCGCCGCCACGGCGACGGTGGCAGATCCTTTACTTGAAGAAGACACTGATTTTTCTGAAACATTCAAGTTCATAAGTCAAATTCTCATGGAAGAGAACTTTGAACAGAAACCTTGTATGCGTTATGACCCTCTGAGTCTGCAACACACTGAAAAATCATTCTATGAGGCTTTGGAATTGGAACCATCTCTTCCTCTTTCCCCAAATCAGCACCCGCTTGAGAGCCCTGATGCCAATTCTTCTAATTCCACCTCTGATTCTGCCAATTCTCATGATTTGAAGCCTTCTTCACCCAATACACCTGTTTCTGGTGGTGCTGCTGTTTTGCATTCCTCTTCCCACACATCCTCTTTTGTTGTTCCTCCACACGCTTTGACTAAAATTAATGACGGAACCGTGGATTTGGATTCTTCTGTAACCAAGCTCTTGGCTGAAAATATTTTCAATGATGCAGACTCTATGTTGCAGTTTAAAAGAGGGTTGGAGGAGGCTAGTAAGTTTCTTCCACAGAGACCTCAGCTTTTCACTGGATTGGAGAGCGCCACTGTGTCTGCAGAGCCAAAGGGAGGAGGGGTAGCTGTGAAGATGGAGAATTCAATTAAGGTGAAGAGTAGAAAGAATCATGCGCGCCAAGATGAAGAAGAAGAAAGAAGCAACAAACAGTCTGCTGTGTCTACTGTTTGTGTTGAGGAGGAGTGTGATATATCTGAAATGTTTGACAGGGTTCTGCTTAGTGTTGAAAATGTGCCACTGTGTGCTGAAAAGAATGGATCGGTGGCAGTGGGAGATAGTAACACAAAGCTAAGTGAGAAATCGAATTTGTCTGATGGAGGGAAGGTTCGATCCAAGAGGCAAGGGAGAAAGAAGGAAACGGTGGATTTGAGGACCCTTTTGGTTTTGTGTGCGCAAGCTGTGTCTTCCAGTGACAACAGGACTGCTAATGAACTGTTGAAGCAGATTAGGCAGCATTCTTCTGCTTTGGGTGATGCCTCACAGAGGTTGGCTCATTATGTGGCCAATGCTGTTGAAGCTCGCTTGGTTGGTTGTGGAACTGCCACCCAAATATTTTATATGAGCAACAAGATCTTCACTACTACTGATTTCCTCAAAGCTTACCAAGTTTTCATATCTGCCTGCCCTTTCAAGAAATTTGCACATTTCTTTGCAAATAAGATGATTATGAAAACAGCTGATGGGGCAGAAACTCTTCATATTATTGACTTTGGTATCCTGTATGGTTTCCAGTGGCCAATTCTTATCAAGTTTTTATCAGGCAGGCCTGGAGGGCCTCCCAAGCTGCGCATCACAGGAATAGAGTATCCCCAACCTGGCTTTCGTCCGACTGAAAGAATTGCGGAGACTGGTTGTCGTCTGGCTAAGTATTGCAAGCGATTCAATGTTCCCTTTGAGTACAAGGCCATAGCATCACGAAACTGGGAAACCATTCAAATTGAAGACCTTAAAATTGAGCGCAATGAGGTGCTTGCTGTGAACTGTCTGATAAGGTTTAAGAATTTGCTTGATGAGTCAATTGAAGTGAACAGTCCCAGAAATGCTGTTCTGAGTTTAATCAGGAAGATGAAACCAGATATTTTTGTTCACTGCGTAGTAAATGGATCTTATAATGCTCCTTTCTTTGTCACACGCTTCAGGGAGGCACTGTTCCATTATTCTTCAATCTATGATATGTTTGATACTCTCATATCCCGTGAAAATGAATGGAGGTTGATGCTTGAGAGAGAATTTTTGGGTCGGGAGATAATGAATGTGGTAGCATGTGAAGCTCTTGAGAGGGTTGAGAGGCCAGAGACATACAAACAATGGCAGGTTAGGAATACTAGAGCTGGCTTTAAGCAGCTCCCACTGGATAAGGAGTTAATGACCAAATTTAGGGGCAAATTAAGGGAATGGTACCACAGGGATTTTGTCTTTGATGAAGATGCCAACTGGATGCTTCAAGGTTGGAAGGGTCGCATTTTGTTACCTTCAGCTGTTGTGAACTTTGATGAATATTCTTCCCAAGTTTGCACCAAGTGTGACCCTGTATAA 2223 0.4354 MDPNFVYEFDEPNQWDLNGHYTNLFTDPLFYHSDVSPLGFSQDTISNSEPFVSSSSAAAAATATVADPLLEEDTDFSETFKFISQILMEENFEQKPCMRYDPLSLQHTEKSFYEALELEPSLPLSPNQHPLESPDANSSNSTSDSANSHDLKPSSPNTPVSGGAAVLHSSSHTSSFVVPPHALTKINDGTVDLDSSVTKLLAENIFNDADSMLQFKRGLEEASKFLPQRPQLFTGLESATVSAEPKGGGVAVKMENSIKVKSRKNHARQDEEEERSNKQSAVSTVCVEEECDISEMFDRVLLSVENVPLCAEKNGSVAVGDSNTKLSEKSNLSDGGKVRSKRQGRKKETVDLRTLLVLCAQAVSSSDNRTANELLKQIRQHSSALGDASQRLAHYVANAVEARLVGCGTATQIFYMSNKIFTTTDFLKAYQVFISACPFKKFAHFFANKMIMKTADGAETLHIIDFGILYGFQWPILIKFLSGRPGGPPKLRITGIEYPQPGFRPTERIAETGCRLAKYCKRFNVPFEYKAIASRNWETIQIEDLKIERNEVLAVNCLIRFKNLLDESIEVNSPRNAVLSLIRKMKPDIFVHCVVNGSYNAPFFVTRFREALFHYSSIYDMFDTLISRENEWRLMLEREFLGREIMNVVACEALERVERPETYKQWQVRNTRAGFKQLPLDKELMTKFRGKLREWYHRDFVFDEDANWMLQGWKGRILLPSAVVNFDEYSSQVCTKCDPV 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1232 740 MobiDBLite consensus disorder prediction 259 280 - -
Aed1g1232 740 MobiDBLite consensus disorder prediction 332 346 - -
Aed1g1232 740 Pfam GRAS domain family 352 719 IPR005202 -
Aed1g1232 740 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 45 722 IPR005202 -
Aed1g1232 740 MobiDBLite consensus disorder prediction 121 166 - -
Aed1g1232 740 PANTHER SCARECROW-LIKE PROTEIN 34 45 722 - -
Aed1g1232 740 ProSiteProfiles GRAS family profile. 343 725 IPR005202 -
Aed1g1232 740 MobiDBLite consensus disorder prediction 126 166 - -
Aed1g1232 740 MobiDBLite consensus disorder prediction 320 346 - -
Aed1g1232 740 MobiDBLite consensus disorder prediction 259 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1232 Aed-Chr1 11800491 11803237 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1232 79 723 GRAS Transcription Factor Family AT1G07530 49.282 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aed1g1232 GRAS 4.5e-110 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1232 - - aprc:113855970 1029.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1232 1 11800491 11803237 Aed1g1232 1 11800491 11803237 ECH
Aed1g1232 1 11800491 11803237 Aed5g0389 5 2777967 2780159 ECH
Aed1g1232 1 11800491 11803237 Aed5g0388 5 2774707 2776728 PCT
Aed5g0386 5 2755300 2757315 Aed1g1232 1 11800491 11803237 PCT