Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1231 ATGGCTAGAATATTATCAGTCTCCACCATGAATACTTATACTACTGACGAAGAGGAAACTGATTCCTCCGCTGTCCTTAGCTACATAAAGCAGATGCTGATGAAAGAGGACACTGAGGAGGAGAAGTACAGTATGTTCCATGATTCCTTGATCCTCCAACACACTGAGAGATCATTTTATGAGGTTATCACTCACACTCACCCTGACTCTCCCTTGAGAACCATTGACCCTATTCCTCATAACTTTGAGAGAGGATTAGACCTTCCTCAACACACTACTCCATTCATCAATGTTGACCCGGACAACACAAAGACAGAGGCTCATCCGCAGGTGGGAATTAAGACAGAAAAAGTAGAAGGTGGAAGTGAAAGTGTTGAACAAGTGATACTAGTGTCAGGAAGGAAACATAGGGAGAGGGCAGAGAATGAAGAAGCAGATGGGAGAAGCAGGAAGCAATCAGCAGCATACATGGACGAGAGTGAACTATCCGAATTGTTTGATAAAGTGGTGCTAGGCACTGGGTTGGGAAAAGGGGTACCACCCAACACAACTCTCCACCAAAACCGTCCAACAATATTAACTGGCGAAGGAGATGTGGATCTGAGGACACTGTTGATGCTATGTGCACAGGCCATTGCTTCTGATAGTCCCTCATTTGCTAGCCAGTTAGTGAAGCAGATTAAGCAGCATTCTTCTCCAATAGGGAATGAGACTCAGAGGCTTGCACATTACTTCGGAAATGCCCTTCAAGCACGCTTGGATGGAACTGGTTACCAGGTTTATAGTGTTCTATCCTCCAAAAGAACCTCTGCCAAAGACATGATCAAAGCTTATCATGTATATGCTTCAGTCTGCCCATTTGAAAAGATAGCGATCATGTTTGCCAACAATTGTATTAGGAATCTAATCGGGGATGCCGAAACAATTCACATCATAGACTTCGGTATCCGCTATGGCTTCAAGTGGCCTGGACTTATCGGCCATCTATCAAGACGTGCTGGTGGTCCACCCAAGCTACGCATCACGGGGATTGATCTGCCACAACCAGGTTTCAGGCCAGAAGAGAGGGTGCTCGAGACAGGGCGGAGACTTGAAAATTATTGTAAGCGTTTCAATGTTCCATTTGAATTCAATGCTATTGCAAAGAGATGGGACACCATCAAAGTGGAGGACCTCAAGATAGGAAAAAACGAATTTGTGGCTGTCAACTGCATGTTTCAGTTTGAGCATCTGCTAGATGAGACTGCTGTGGTGTTGAATAATCCGAGTCCGAGGGATGCTGTTCTGAGGTTGATTAAGAAGGCAAATCCTGACATATTTGTGCATGGCATTGTCAATGGATCCTATGATGTACCATTCTTTGTGTCACGGTTCCGGGAGGCTCTCTTTCATTACACCGCATTGTTTGACATGCTTGAGACCAACGTTGCTGGTGAAGACCCCATGAGGATGATGTTTGAGATGGAGTTGTTTGGACCGGAGATAATGAACATCATAGCTTGTGAAGGTTTTGAGAGGGTTGAGAGACCACAAACATACAACCAATGGCAACTTCGGAACATGAGAAATGGGTTTAGGCTGCTTCCTCTGGATCAGCGAATCATTGACAAATTAAAGGGTAGGTTGAAAGATGATGCCTACAACAACAATTTCTTGCTAGAGGTGGATGGAGACTGGGTGCTACAAGGTTGGAAGGGCAGAATTCTATATGCTTCCTCTTGTTGGGTACCGGCATTAGCATAG 1743 0.4492 MARILSVSTMNTYTTDEEETDSSAVLSYIKQMLMKEDTEEEKYSMFHDSLILQHTERSFYEVITHTHPDSPLRTIDPIPHNFERGLDLPQHTTPFINVDPDNTKTEAHPQVGIKTEKVEGGSESVEQVILVSGRKHRERAENEEADGRSRKQSAAYMDESELSELFDKVVLGTGLGKGVPPNTTLHQNRPTILTGEGDVDLRTLLMLCAQAIASDSPSFASQLVKQIKQHSSPIGNETQRLAHYFGNALQARLDGTGYQVYSVLSSKRTSAKDMIKAYHVYASVCPFEKIAIMFANNCIRNLIGDAETIHIIDFGIRYGFKWPGLIGHLSRRAGGPPKLRITGIDLPQPGFRPEERVLETGRRLENYCKRFNVPFEFNAIAKRWDTIKVEDLKIGKNEFVAVNCMFQFEHLLDETAVVLNNPSPRDAVLRLIKKANPDIFVHGIVNGSYDVPFFVSRFREALFHYTALFDMLETNVAGEDPMRMMFEMELFGPEIMNIIACEGFERVERPQTYNQWQLRNMRNGFRLLPLDQRIIDKLKGRLKDDAYNNNFLLEVDGDWVLQGWKGRILYASSCWVPALA 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1231 580 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 15 577 - -
Aed1g1231 580 Pfam GRAS domain family 201 575 IPR005202 -
Aed1g1231 580 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 15 577 IPR005202 -
Aed1g1231 580 ProSiteProfiles GRAS family profile. 192 576 IPR005202 -
Aed1g1231 580 MobiDBLite consensus disorder prediction 133 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1231 Aed-Chr1 11795280 11797022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1231 25 68 GRAS Transcription Factor Family AT1G07530 54.545 1.50e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aed1g1231 GRAS 9.7e-107 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1231 - - gmx:100780343 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1231 1 11795280 11797022 Aed1g1231 1 11795280 11797022 ECH
Aed9g1855 9 22178020 22180239 Aed1g1231 1 11795280 11797022 ECH
Aed1g1231 1 11795280 11797022 Aed5g0389 5 2777967 2780159 PCT
Aed5g0388 5 2774707 2776728 Aed1g1231 1 11795280 11797022 PCT