Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1226 ATGGGTTCGCTGCTATGCCTTGTTATGTTGTCCCTAATGTGGATGGTGGACGCTAGGATTCCAGGTGTTTACAGTGGCGGTGCCTGGCAAAGTGCCCACGCCACATTCTACGGAGGATCCGATGCTTCCGGAACCATGGGAGGAGCATGCGGGTACGGGAACCTGTACAGCCAGGGGTACGGAGTGAACACTGCAGCGCTGAGCACGGCACTGTTCAACAGCGGGTTGAGTTGCGGAGCGTGCTTTGAGATGAAATGCGCAAACGACAAGCAGTGGTGTCACTCCGGAAGCCCATCGATATTCATAACCGCCACCAACTTCTGCCCTCCTAACTACGCTCTTCCAAACGACAATGGTGGCTGGTGCAACCCTCCTCGGCCTCACTTCGACCTCGCCATGCCCATGTTCCTTAAAATCGCCGAATACCGCGCCGGCATCGTACCTGTCGCATACCGCAGGGTGCCCTGTAGGAAGCATGGCGGGATCAGGTTCACTATCAACGGCTTCCGTTACTTCAACTTGGTGCTGATCAGCAACGTTGCGGGTGCAGGGGATCTCGTGCACTCTTACGTTAAGGGCTCCCGAACTGGCTGGATGCCAATGAGCCGAAACTGGGGCCAGAACTGGCAGTCCAACGCTGTTTTGGTGGGCCAGGCTTTGTCTTTCAGAGTCACCGCCAGTGATCGCCGCTCTTCCACCTCTTGGAACATTGTTCCACCAAATTGGCAATTTGGTCAAACTTTCACCGGAAAAAACTTCCGTGTCTGA 768 0.5534 MGSLLCLVMLSLMWMVDARIPGVYSGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEMKCANDKQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKHGGIRFTINGFRYFNLVLISNVAGAGDLVHSYVKGSRTGWMPMSRNWGQNWQSNAVLVGQALSFRVTASDRRSSTSWNIVPPNWQFGQTFTGKNFRV 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1226 255 SMART dpbb_1 64 151 IPR007112 -
Aed1g1226 255 SUPERFAMILY Barwin-like endoglucanases 7 179 IPR036908 -
Aed1g1226 255 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Aed1g1226 255 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Aed1g1226 255 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Aed1g1226 255 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Aed1g1226 255 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Aed1g1226 255 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Aed1g1226 255 SUPERFAMILY PHL pollen allergen 158 250 IPR036749 -
Aed1g1226 255 Gene3D - 161 253 IPR036749 -
Aed1g1226 255 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Aed1g1226 255 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Aed1g1226 255 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Aed1g1226 255 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Aed1g1226 255 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Aed1g1226 255 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Aed1g1226 255 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Aed1g1226 255 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Aed1g1226 255 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Aed1g1226 255 Gene3D - 17 157 IPR036908 -
Aed1g1226 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 250 IPR007117 -
Aed1g1226 255 Pfam Lytic transglycolase 64 151 IPR009009 -
Aed1g1226 255 Pfam Expansin C-terminal domain 162 239 IPR007117 -
Aed1g1226 255 PANTHER EXPANSIN 5 254 - -
Aed1g1226 255 PANTHER EXPANSIN-A15 5 254 IPR002963 GO:0009664
Aed1g1226 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 161 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1226 Aed-Chr1 11764599 11766030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1226 5 255 Expansin Gene Family AT2G39700 84.064 1.86e-162 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1226 - - gmx:100789913 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1226 1 11764599 11766030 Aed1g1226 1 11764599 11766030 ECH
Aed1g1226 1 11764599 11766030 Aed3g2072 3 24658300 24659975 ECH
Aed1g1226 1 11764599 11766030 Aed5g0394 5 2809758 2812012 ECH
Aed9g1851 9 22122796 22125959 Aed1g1226 1 11764599 11766030 ECH
Aed1g1226 1 11764599 11766030 Aed5g0394 5 2809758 2812012 PCT