Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1223 ATGGGAAACAAGACAAGGAATGAGATTGAGGATTTATGTGATCACAACATGGGAGTTTGTTTGAGCGCCCAAATTAAAGCTGAAAGCCCATATAACACCGGGTTCAATTCAAAGTATGTGAGTACAGATGGAAATGATTTGGGCAGCACAAACAATAAGGTTTCGGCAATCTCAGTTCCTCGGAGTGAAGGTGAGATCTTGCAGTCATCCAATTTAAAGAGCTTTACCTTATCAGAACTTAAGACTGCCACAAGAAATTTCCGTCCAGATAGCGTGTTAGGAGAAGGTGGTTTTGGATCAGTTTTTAAGGGGTGGATCGATGAGAATTCATTGACTGCTACCAGACCTGGCACTGGCATTGTTATTGCTGTTAAAAGACTTAATCAAGATGGTATCCAGGGTCACAGGGAGTGGTTGGCTGAAGTCAACTACCTTGGACAGCTTTCTCATCCTCATCTAAATTACAATGCAAAACTTTCTGATTTTGGGCTGGCAAAGGACGGACCTACAGGTGACAAAAGTCATGTCTCCACTAGGGTAATGGGAACCTATGGATACGCAGCACCTGAGTATCTAGCCACAGTAAGGGACGGCACGACCCTGATTCCTCAATCCTCGTCCTGGCCCACCTAA 633 0.4439 MGNKTRNEIEDLCDHNMGVCLSAQIKAESPYNTGFNSKYVSTDGNDLGSTNNKVSAISVPRSEGEILQSSNLKSFTLSELKTATRNFRPDSVLGEGGFGSVFKGWIDENSLTATRPGTGIVIAVKRLNQDGIQGHREWLAEVNYLGQLSHPHLNYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATVRDGTTLIPQSSSWPT 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1223 210 Pfam Protein tyrosine and serine/threonine kinase 91 153 IPR001245 GO:0004672|GO:0006468
Aed1g1223 210 ProSitePatterns Protein kinases ATP-binding region signature. 93 125 IPR017441 GO:0005524
Aed1g1223 210 ProSiteProfiles Protein kinase domain profile. 1 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1223 210 Gene3D Phosphorylase Kinase; domain 1 57 154 - -
Aed1g1223 210 SUPERFAMILY Protein kinase-like (PK-like) 58 194 IPR011009 -
Aed1g1223 210 Gene3D Transferase(Phosphotransferase) domain 1 155 201 - -
Aed1g1223 210 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL9-RELATED 154 195 - -
Aed1g1223 210 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL9-RELATED 39 153 - -
Aed1g1223 210 PANTHER OS01G0588500 PROTEIN-RELATED 154 195 - -
Aed1g1223 210 PANTHER OS01G0588500 PROTEIN-RELATED 39 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1223 Aed-Chr1 11747914 11751102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1223 155 194 Glycoside Hydrolase AT3G07070 80.000 3.34e-15 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Aed1g1223 PK_Tyr_Ser-Thr 3.4e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1223 - - pop:7481536 273.092