Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1217 ATGGAGCTTTTGAAGCCTTTGCATCCTCACCATCATGCACCCATTTTGCCAATTCCCTTTCACGCCCTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCACAATCTCAGGTTCCCCTCCCTATGATTTCTAAGGTTCATGTTGCTGTTGGGAAATCGCTAGACAAAGCTGTTCCCTTGCTTCGATGGGCTTTAAACCACTTTCGGAACGCGGAAATCGTCATTGTTCATGCTTATCAACCTTCTCTCACCATCCCCACTCTATCAGTGGGGAAATTGCCAGCATCACAGGCAAGTCCTGCAGTGGTGTCTGCGTTTCGAAAAGTGGAAAGAGAGCAAACCATGAAGCTTTTAGACAAGTATTTCAGCATTTGCCGCGCAGCTAGGGTTAAGGCAAGCATTATTGTTACTGAAGCGGACCAAGTACAAAAAGGAATCGTTGATTTGGTTATTAAGCATAATATTGAGAAGCTTGTCATTGGAGCAGTACCAGAAAATTGCATGAAAGTGAAAAGGAATTCCGGTAAAGCAAATTACACTGCCAAAAATGCTCCTCCTTTCTGTGAAGTATGGTTTATCTATAAAGGTAAACACATTTGGACAAGAGAAGCTTCTGAAACACCATGTTCTTCATCCTCTTGTACTCAACTTGAGATTACCATCACAGATAGCTTGAGATGTAGATCTTTCCAATATGGTAAGAATGAATTATTTCACTCAGAATATCATCAACCAAATTCAGCAAGAACTACTACTGGTTCTGGAATTAGAAGTTGGGTTCATGGGGAAATCATTGAAACCGAAGCCACCTTTTCATCCAAAGCATCCAGTTACAGCAGTCAGTGTTCCCCCCAAAATCCTTCTCGGGCTTTAGATACATATTTAGAAGCCATGGAAGAAAGAATTAACAAACAACTTATTGAAACCAAGAGAGAAGCTGAGGCAGTAACAGATGAAGCCTTTGCAGAGCTATTAAAGTGCGAGAGGTTAGAAGTTGAAGCCATGGAGGCCATAAGGAAGGTCAATTTGTTTGAATCTGCCCATGCACGTGAAGAAAAGCTCAGAAAAGAGGCAGAGGATGCACTGAGAGCTACAGTACAAGAACAACAAAAGCTCTTGAATGAGAGTGAAGAAATTGCTGGCGAGCTACAAATGACCATGAGAAATATTGCCCTGCTAGATAGTCGTGCTCAGGAAGCAAACCGTAGGCGTGATGAAGCTGCAGATGAACTATCACTAATTCAAGAATCCATCTCAACCCTGTGGCAAGAAAGGCAGCAGATCAGGAGACAGAAAATGGAAGCCCTACGTTGGCTTGAGCGGTGGAGAAGTCGTGGACAAGTTGGAGCAGCTCATTGCAATGGGGTGATTGGGTTTGCCGAAGAATTACCTGAGTTGGCAGAATTTTCATTATCAGATCTTCAAAATGCCACATGTAATTTTTCCAATAGCTTTAAAATTGAGCAAGGTGGATTCGGTTGTATATACAAGGGAGAAATGTTGGGTAGGACTGTTGCTATAAAAAAGTTCCATCAACATAACATGCAAGGACCATTGGAGTTTCGTCAAGAGGTTCAAGTTCTTGGTAGTCTCCAGCACCCTCATTTAATCACTTTGCTTGGTGTTTGCCCCGAAGCCTGGTCAATTGTATATGAGTACCTCCCCAATGGAACTCTTCAAGACTACCTATTCCGAAAAAGCAACAATTCCCCTTTGACATGGAATACTCGAGCACGAATGATTGCGGAAACTGCTAGTGCACTCTGCTTCCTACATTCTTTTAAACCTGAAACTATTATCCACGGTGATCTGAAGCCAGAAACTATACTACTTGATTCTTCACTTGGTTGCAAGATTTGTGGATTTGGGTTCTGCAGGCTAGTGAGTGAGGAGTCTCTCCACCGTCCTAGTTTCCACCTGAGCACTGAACCAAAGGGTGCTTTCACATATACAGATCCAGAGTTTCAGAGAACTGGAATACTAACAACCAAGTCTGACATCTACTCCTTCGGCCTCATCATCTTACAACTCCTCACTGGTAGGACTCCAGTTGGATTAGCAGTTTTAGTTCGCAATGCAGTTTCATGCGGAAAGTTGTCTTCAATTCTTGATTCTTCAGCTGGAGAATGGCCCTCAGCTGTGGCAGCGCGATTGGTTGAATTGGGATTGCAATGCTGTCAACAAAACGGTAGAGTCAGACCAGAATTAACTCCTACACTTGTGAGAGAATTGGAGCAGCTGCATGCTTCAGAAGAGCGACCTGTACCATCTTTTTTCTCATGTCCAATCCTTCAGGAAATAATGCATGATCCTCAAGTTGCGGCAGACGGATTTACCTATGAAGGGGATGCCATACGTGAATGGTTGGAAAATGGACATGATACTTCTCCCATGACTAATTTGAAATTGAGTCACCTGTTTCTTACTCCCAATCACGCACTTCGACTTGCCATCCAAGACTGGCTTTGCAAATCTTAA 2475 0.4303 MELLKPLHPHHHAPILPIPFHALPSSSSSSSSSQSQVPLPMISKVHVAVGKSLDKAVPLLRWALNHFRNAEIVIVHAYQPSLTIPTLSVGKLPASQASPAVVSAFRKVEREQTMKLLDKYFSICRAARVKASIIVTEADQVQKGIVDLVIKHNIEKLVIGAVPENCMKVKRNSGKANYTAKNAPPFCEVWFIYKGKHIWTREASETPCSSSSCTQLEITITDSLRCRSFQYGKNELFHSEYHQPNSARTTTGSGIRSWVHGEIIETEATFSSKASSYSSQCSPQNPSRALDTYLEAMEERINKQLIETKREAEAVTDEAFAELLKCERLEVEAMEAIRKVNLFESAHAREEKLRKEAEDALRATVQEQQKLLNESEEIAGELQMTMRNIALLDSRAQEANRRRDEAADELSLIQESISTLWQERQQIRRQKMEALRWLERWRSRGQVGAAHCNGVIGFAEELPELAEFSLSDLQNATCNFSNSFKIEQGGFGCIYKGEMLGRTVAIKKFHQHNMQGPLEFRQEVQVLGSLQHPHLITLLGVCPEAWSIVYEYLPNGTLQDYLFRKSNNSPLTWNTRARMIAETASALCFLHSFKPETIIHGDLKPETILLDSSLGCKICGFGFCRLVSEESLHRPSFHLSTEPKGAFTYTDPEFQRTGILTTKSDIYSFGLIILQLLTGRTPVGLAVLVRNAVSCGKLSSILDSSAGEWPSAVAARLVELGLQCCQQNGRVRPELTPTLVRELEQLHASEERPVPSFFSCPILQEIMHDPQVAADGFTYEGDAIREWLENGHDTSPMTNLKLSHLFLTPNHALRLAIQDWLCKS 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1217 824 CDD RING-Ubox_WDSUB1_like 758 799 - -
Aed1g1217 824 PANTHER OS10G0100500 PROTEIN 32 823 - -
Aed1g1217 824 Gene3D HUPs 30 190 IPR014729 -
Aed1g1217 824 CDD STK_N 44 195 - -
Aed1g1217 824 Gene3D Transferase(Phosphotransferase) domain 1 553 754 - -
Aed1g1217 824 ProSiteProfiles Protein kinase domain profile. 480 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1217 824 PANTHER OS02G0152300 PROTEIN 32 823 - -
Aed1g1217 824 Pfam Protein tyrosine and serine/threonine kinase 485 736 IPR001245 GO:0004672|GO:0006468
Aed1g1217 824 Coils Coil 382 416 - -
Aed1g1217 824 SUPERFAMILY Protein kinase-like (PK-like) 464 739 IPR011009 -
Aed1g1217 824 Coils Coil 298 318 - -
Aed1g1217 824 Coils Coil 347 374 - -
Aed1g1217 824 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 755 824 IPR013083 -
Aed1g1217 824 Gene3D Phosphorylase Kinase; domain 1 457 552 - -
Aed1g1217 824 SMART Ubox_2 757 820 IPR003613 GO:0004842|GO:0016567
Aed1g1217 824 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 41 163 - -
Aed1g1217 824 ProSiteProfiles U-box domain profile. 753 824 IPR003613 GO:0004842|GO:0016567
Aed1g1217 824 SUPERFAMILY RING/U-box 749 823 - -
Aed1g1217 824 Pfam U-box domain 754 823 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1217 Aed-Chr1 11719513 11724616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1217 44 821 U-box Gene Family AT2G45910 36.894 2.50e-167 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Aed1g1217 PK_Tyr_Ser-Thr 4.5e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1217 - - gmx:100788846 1480.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1217 1 11719513 11724616 Aed1g1217 1 11719513 11724616 ECH
Aed1g1217 1 11719513 11724616 Aed5g0400 5 2841327 2847399 PCT