Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1216 ATGTCCGTGCAAGTTGCAACAACTGCGTCCGTCAAGCCTAGCCGCTACAATCTGATCATCGAGGATGTTCTTTTTCTTCAATTTGAAAGGAAAATGATAGACACTGAGGATATTCAACCACTCGTCTGCGATAATGGGACAGGAATGGTTAAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCAGTGTTTCCTAGCATTGTTGGTCGGCCACGTCACACGGGTGTGATGGTAGGGATGGGGCAAAAGGATGCATATGTGGGGGATGAAGCTCAGTCGAAGCGTGGTATACTAACTCTGAAATATCCGATTGAGCATGGTATTGTTAGTAACTGGGATGACATGGAGAAGATCTGGCATCACACTTTCTACAACGAACTTCGAGTCGCCCCAGAGGAGCACCCTGTTCTCCTCACTGAAGCACCTCTGAACCCAAAGGCTAATCGTGAAAAAATGACTCAAATCATGTTTGAGACCTTCAACACACCTGCTATGTATGTTGCTATCCAGGCCGTTCTATCCCTCTATGCTAGCGGCCGTACTACTGGTATTGTTCTTGACTCTGGAGATGGTGTGAGCCACACTGTTCCTATTTATGAAGGGTATGCCCTCCCTCATGCCATCCTCCGTCTTGACTTAGCAGGGCGTGACCTGACTGAGGCCCTCATGAAAATCCTTACAGAGCGTGGTTATTCCTTCACAACCTCAGCCGAGAGAGAAATCGTAAGGGATGTGAAGGAAAAGCTGTCTTATATAGCCCTTGATTATGAGCAAGAACTTGAAACTTCAAAAACTAGTTCTTCTGTTGAGAAGAGCTTTGAGTTGCCTGATGGACAGGTCATCACCATTGGCGCCGAGCGGTTCCGTTGTCCTGAGGTCCTCTTCCAGCCATCCATGATTGGAATGGAAGCTGTTGGCATTCATGAAACCACATACAATTCAATTATGAAGTGTGATGTTGATATCAGGAAGGACTTGTATGGAAACATTGTCCTCAGTGGTGGTTCTACCATGTTCACTGGTATTGCCGACAGAATGAGCAAGGAAATCACTGCTTTGGCCCCAAGCAGCATGAAGATCAAGGTCGTTGCTCCACCCGAGAGAAAATACAGTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAGATGTGGATTGCCAAGGCAGAGTACGATGAGTCTGGTCCTTCAATTGTACACAGGAAATGCTTTTAA 1227 0.4686 MSVQVATTASVKPSRYNLIIEDVLFLQFERKMIDTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTEALMKILTERGYSFTTSAEREIVRDVKEKLSYIALDYEQELETSKTSSSVEKSFELPDGQVITIGAERFRCPEVLFQPSMIGMEAVGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFTGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1216 408 PANTHER ACTIN 3 32 407 - -
Aed1g1216 408 SUPERFAMILY Actin-like ATPase domain 180 408 IPR043129 -
Aed1g1216 408 Gene3D - 41 402 - -
Aed1g1216 408 PANTHER ACTIN 32 407 IPR004000 -
Aed1g1216 408 SUPERFAMILY Actin-like ATPase domain 37 186 IPR043129 -
Aed1g1216 408 Pfam Actin 36 408 IPR004000 -
Aed1g1216 408 Gene3D - 171 371 - -
Aed1g1216 408 ProSitePatterns Actins and actin-related proteins signature. 137 149 IPR020902 -
Aed1g1216 408 CDD NBD_sugar-kinase_HSP70_actin 41 214 - -
Aed1g1216 408 ProSitePatterns Actins signature 1. 86 96 IPR004001 -
Aed1g1216 408 PRINTS Actin signature 148 161 IPR004000 -
Aed1g1216 408 PRINTS Actin signature 82 93 IPR004000 -
Aed1g1216 408 PRINTS Actin signature 269 285 IPR004000 -
Aed1g1216 408 PRINTS Actin signature 59 68 IPR004000 -
Aed1g1216 408 PRINTS Actin signature 94 116 IPR004000 -
Aed1g1216 408 PRINTS Actin signature 173 192 IPR004000 -
Aed1g1216 408 SMART actin_3 38 408 IPR004000 -
Aed1g1216 408 ProSitePatterns Actins signature 2. 389 397 IPR004001 -
Aed1g1216 408 Gene3D Actin; Chain A, domain 4 213 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1216 Aed-Chr1 11715169 11719331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1216 32 408 Cytoskeleton Gene Families AT3G46520 96.817 0.0 761
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1216 K10355 - gmx:100815472 738.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1216 1 11715169 11719331 Aed1g1216 1 11715169 11719331 ECH
Aed1g1216 1 11715169 11719331 Aed5g0401 5 2848200 2851911 ECH
Aed1g1216 1 11715169 11719331 Aed5g0401 5 2848200 2851911 PCT