Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1209 ATGGAGATTCCTCCAAGTGGAAGTGGCAGTGCTGAGGCGGAGAATAATGGAAGCAGCAGCAGGAAAGGATCGAGTCATTCATCAGTTTCACGATGGAGTCCTACAAAGGAGCAAATAGCGATGTTGGAGAACTTTTACAGGCAGGGAATAAGAACTCCCAATACTGACCAAATTCAACAGATTACATCTAGGCTCAGAGCTTATGGTCACATCGAGGGTAAGAATGTCTTCTACTGGTTTCAAAATCACAAAGCCCGCCAAAGACAGAAGCTCAAGCAGCAGAACCAACAAACCAATCGCTTTCTTCCCATTTGCCAAAATGTTGCATGCTCCCCATATTATTTGCAACAGAGTGGAATCAGCTTTTATCCTCAACAATCAACAGTTGGGATGCGACAACAAGATTATAACCATAGAAACAGTAACCGTGAAGCCTTAACTCTCTTCCCTCTTCATCCAACCGGCATTTTGAAAGATAAAACAACAACTGCTTCTGTTTCTGTTGATATCACCGACGACACTCTTGCTGTTGATCATCACGATGCTCATCTTGGAAATCAACCCTTCTTTAATTTTTTTCACTGCTGA 588 0.4269 MEIPPSGSGSAEAENNGSSSRKGSSHSSVSRWSPTKEQIAMLENFYRQGIRTPNTDQIQQITSRLRAYGHIEGKNVFYWFQNHKARQRQKLKQQNQQTNRFLPICQNVACSPYYLQQSGISFYPQQSTVGMRQQDYNHRNSNREALTLFPLHPTGILKDKTTTASVSVDITDDTLAVDHHDAHLGNQPFFNFFHC 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1209 195 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 132 194 IPR044555 GO:0003700|GO:0099402
Aed1g1209 195 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 15 130 IPR044555 GO:0003700|GO:0099402
Aed1g1209 195 Gene3D - 6 89 - -
Aed1g1209 195 ProSiteProfiles 'Homeobox' domain profile. 25 90 IPR001356 GO:0003677
Aed1g1209 195 PANTHER TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED 15 130 - -
Aed1g1209 195 MobiDBLite consensus disorder prediction 9 34 - -
Aed1g1209 195 Pfam Homeodomain 30 89 IPR001356 GO:0003677
Aed1g1209 195 SUPERFAMILY Homeodomain-like 29 94 IPR009057 -
Aed1g1209 195 PANTHER TRANSCRIPTION FACTOR HOMOBOX-WOX FAMILY-RELATED 132 194 - -
Aed1g1209 195 CDD homeodomain 35 90 IPR001356 GO:0003677
Aed1g1209 195 MobiDBLite consensus disorder prediction 1 34 - -
Aed1g1209 195 SMART HOX_1 27 94 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1209 Aed-Chr1 11672826 11673489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1209 27 178 Wox Gene Family AT5G59340 48.571 5.60e-43 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Aed1g1209 Homeodomain 8.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1209 - - gmx:100786177 226.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1209 1 11672826 11673489 Aed1g1209 1 11672826 11673489 ECH