Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1203 ATGTCTGCAGCTTTGGACATGACCCTCGAGGATATCATTAAGAACAACAAGAAATCTGCGCCCGCCAACACCAGGGGCCGTGGCCGAGCCTCGGGACCCGGACCAGCTCGCCGCTTACCCAACCGTGCCGCCAATCGCGCCGCACCATATGCATCTGCCAAGGCGCCGGAGACTTCGTGGCAGCACGACTTGTACGGGGATCAGCCCGTCGCGGCCGCGTATCCGGGTGGTCGAGCGTCTTCCATCGAAACAGGGACTAAGCTCTACGTATCCAATTTGGATTATGGTGTTTCGAATGATGATATTAAGGAGTTGTTTCTTGAAGTTGGTGATGTGAAACGGCATACTGTTCATTATGACAGGAGTGGGAGATCGAAGGGTACGGCAGAAGTAGTCTTCTCTCGTCGAGCTGATGCGGTAGCTGCAGTGAAGAGGTACAACAATGTTCAGCTGGATGGGAAACCAATGAAGGTAGAGATTGTGGGGACAAACATTGCTACACATGCTGCCCTGCCTGCTGTGAATGGAACTTTTGGAAATCTAAATGGAGTTCCCAGAAGCAGTGGACAAGGGAGAAGTGGGCCATTAGGAAGGCTGCGTGGTGGTGGTGGGGGTAGAGGGCGTGGCGGCATTCGAAGGGGTCAGGGACGTGGAAGTGGAAGTGGAAGAGGAGGTCGTGGTGAAAAGGTATCTGCTGAAGATCTCGATGCTGATTTGGAGAAGTACCACGCTGAGGCTATGCAATTAAACTGA 753 0.5339 MSAALDMTLEDIIKNNKKSAPANTRGRGRASGPGPARRLPNRAANRAAPYASAKAPETSWQHDLYGDQPVAAAYPGGRASSIETGTKLYVSNLDYGVSNDDIKELFLEVGDVKRHTVHYDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKVEIVGTNIATHAALPAVNGTFGNLNGVPRSSGQGRSGPLGRLRGGGGGRGRGGIRRGQGRGSGSGRGGRGEKVSAEDLDADLEKYHAEAMQLN 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1203 250 Gene3D - 75 233 IPR012677 -
Aed1g1203 250 SMART FoP_duplication_2 179 250 IPR025715 -
Aed1g1203 250 MobiDBLite consensus disorder prediction 182 250 - -
Aed1g1203 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 163 IPR000504 GO:0003723
Aed1g1203 250 CDD RRM_THOC4 86 160 - -
Aed1g1203 250 SUPERFAMILY RNA-binding domain, RBD 80 160 IPR035979 GO:0003676
Aed1g1203 250 SMART rrm1_1 87 159 IPR000504 GO:0003723
Aed1g1203 250 MobiDBLite consensus disorder prediction 227 243 - -
Aed1g1203 250 MobiDBLite consensus disorder prediction 14 62 - -
Aed1g1203 250 Coils Coil 232 250 - -
Aed1g1203 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 156 IPR000504 GO:0003723
Aed1g1203 250 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 249 - -
Aed1g1203 250 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 249 - -
Aed1g1203 250 Pfam C-terminal duplication domain of Friend of PRMT1 197 244 IPR025715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1203 Aed-Chr1 11621969 11627472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1203 85 160 Eukaryotic Initiation Factors Gene Family AT2G23350 38.158 4.01e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1203 K12881 - gmx:100783362 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1203 1 11621969 11627472 Aed5g0416 5 2941448 2949682 PCT