Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed1g1203 | ATGTCTGCAGCTTTGGACATGACCCTCGAGGATATCATTAAGAACAACAAGAAATCTGCGCCCGCCAACACCAGGGGCCGTGGCCGAGCCTCGGGACCCGGACCAGCTCGCCGCTTACCCAACCGTGCCGCCAATCGCGCCGCACCATATGCATCTGCCAAGGCGCCGGAGACTTCGTGGCAGCACGACTTGTACGGGGATCAGCCCGTCGCGGCCGCGTATCCGGGTGGTCGAGCGTCTTCCATCGAAACAGGGACTAAGCTCTACGTATCCAATTTGGATTATGGTGTTTCGAATGATGATATTAAGGAGTTGTTTCTTGAAGTTGGTGATGTGAAACGGCATACTGTTCATTATGACAGGAGTGGGAGATCGAAGGGTACGGCAGAAGTAGTCTTCTCTCGTCGAGCTGATGCGGTAGCTGCAGTGAAGAGGTACAACAATGTTCAGCTGGATGGGAAACCAATGAAGGTAGAGATTGTGGGGACAAACATTGCTACACATGCTGCCCTGCCTGCTGTGAATGGAACTTTTGGAAATCTAAATGGAGTTCCCAGAAGCAGTGGACAAGGGAGAAGTGGGCCATTAGGAAGGCTGCGTGGTGGTGGTGGGGGTAGAGGGCGTGGCGGCATTCGAAGGGGTCAGGGACGTGGAAGTGGAAGTGGAAGAGGAGGTCGTGGTGAAAAGGTATCTGCTGAAGATCTCGATGCTGATTTGGAGAAGTACCACGCTGAGGCTATGCAATTAAACTGA | 753 | 0.5339 | MSAALDMTLEDIIKNNKKSAPANTRGRGRASGPGPARRLPNRAANRAAPYASAKAPETSWQHDLYGDQPVAAAYPGGRASSIETGTKLYVSNLDYGVSNDDIKELFLEVGDVKRHTVHYDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKVEIVGTNIATHAALPAVNGTFGNLNGVPRSSGQGRSGPLGRLRGGGGGRGRGGIRRGQGRGSGSGRGGRGEKVSAEDLDADLEKYHAEAMQLN | 250 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed1g1203 | 250 | Gene3D | - | 75 | 233 | IPR012677 | - | |
Aed1g1203 | 250 | SMART | FoP_duplication_2 | 179 | 250 | IPR025715 | - | |
Aed1g1203 | 250 | MobiDBLite | consensus disorder prediction | 182 | 250 | - | - | |
Aed1g1203 | 250 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 86 | 163 | IPR000504 | GO:0003723 | |
Aed1g1203 | 250 | CDD | RRM_THOC4 | 86 | 160 | - | - | |
Aed1g1203 | 250 | SUPERFAMILY | RNA-binding domain, RBD | 80 | 160 | IPR035979 | GO:0003676 | |
Aed1g1203 | 250 | SMART | rrm1_1 | 87 | 159 | IPR000504 | GO:0003723 | |
Aed1g1203 | 250 | MobiDBLite | consensus disorder prediction | 227 | 243 | - | - | |
Aed1g1203 | 250 | MobiDBLite | consensus disorder prediction | 14 | 62 | - | - | |
Aed1g1203 | 250 | Coils | Coil | 232 | 250 | - | - | |
Aed1g1203 | 250 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 88 | 156 | IPR000504 | GO:0003723 | |
Aed1g1203 | 250 | PANTHER | RNA AND EXPORT FACTOR BINDING PROTEIN | 1 | 249 | - | - | |
Aed1g1203 | 250 | PANTHER | CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED | 1 | 249 | - | - | |
Aed1g1203 | 250 | Pfam | C-terminal duplication domain of Friend of PRMT1 | 197 | 244 | IPR025715 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed1g1203 | Aed-Chr1 | 11621969 | 11627472 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed1g1203 | 85 | 160 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 38.158 | 4.01e-09 | 54.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed1g1203 | K12881 | - | gmx:100783362 | 342.428 |