Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed1g1199 | ATGTCGCAGAGAATCGGAAGAAAGTTGTTCGTCTACAGATTATCCTTTTACACTACACTGGAGCAGCTCAAGAAGTTGTTCTCTCCATTCGGAGTAGTTACCAAAGCTGATATAGTGCTGGATCCTAGAACTAAAAGGCCCAAAGGGTTCGGGTTTGTCTCCTACGAGTCGGAAATTGAAGCGGAAAAGGCTATCAAAGCCATGAATGGCAGGATTGTTGATGGAAGGCTGATTTTGGTTGAACCTTCAAACGAAAAATGA | 261 | 0.433 | MSQRIGRKLFVYRLSFYTTLEQLKKLFSPFGVVTKADIVLDPRTKRPKGFGFVSYESEIEAEKAIKAMNGRIVDGRLILVEPSNEK | 86 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed1g1199 | 86 | SUPERFAMILY | RNA-binding domain, RBD | 6 | 85 | IPR035979 | GO:0003676 | |
Aed1g1199 | 86 | PANTHER | TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED | 4 | 83 | - | - | |
Aed1g1199 | 86 | SMART | rrm1_1 | 8 | 81 | IPR000504 | GO:0003723 | |
Aed1g1199 | 86 | Gene3D | - | 2 | 86 | IPR012677 | - | |
Aed1g1199 | 86 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 85 | IPR000504 | GO:0003723 | |
Aed1g1199 | 86 | PANTHER | TRANSFORMER-2 SEX-DETERMINING PROTEIN | 4 | 83 | - | - | |
Aed1g1199 | 86 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 78 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed1g1199 | Aed-Chr1 | 11607005 | 11609036 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed1g1199 | 11 | 86 | Eukaryotic Initiation Factors Gene Family | AT5G06000 | 40.789 | 1.53e-11 | 56.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed1g1199 | K13195 | - | gmx:100781760 | 139.813 |