Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1199 ATGTCGCAGAGAATCGGAAGAAAGTTGTTCGTCTACAGATTATCCTTTTACACTACACTGGAGCAGCTCAAGAAGTTGTTCTCTCCATTCGGAGTAGTTACCAAAGCTGATATAGTGCTGGATCCTAGAACTAAAAGGCCCAAAGGGTTCGGGTTTGTCTCCTACGAGTCGGAAATTGAAGCGGAAAAGGCTATCAAAGCCATGAATGGCAGGATTGTTGATGGAAGGCTGATTTTGGTTGAACCTTCAAACGAAAAATGA 261 0.433 MSQRIGRKLFVYRLSFYTTLEQLKKLFSPFGVVTKADIVLDPRTKRPKGFGFVSYESEIEAEKAIKAMNGRIVDGRLILVEPSNEK 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1199 86 SUPERFAMILY RNA-binding domain, RBD 6 85 IPR035979 GO:0003676
Aed1g1199 86 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 4 83 - -
Aed1g1199 86 SMART rrm1_1 8 81 IPR000504 GO:0003723
Aed1g1199 86 Gene3D - 2 86 IPR012677 -
Aed1g1199 86 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Aed1g1199 86 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN 4 83 - -
Aed1g1199 86 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1199 Aed-Chr1 11607005 11609036 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1199 11 86 Eukaryotic Initiation Factors Gene Family AT5G06000 40.789 1.53e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1199 K13195 - gmx:100781760 139.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1199 1 11607005 11609036 Aed1g1199 1 11607005 11609036 ECH