Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1197 ATGGTTACAGATCTTTCGTGCCATCATCATGAGGAGTTGGTGCCGAGCCCAACCATGAAACAACAACGTAGGATGCACCCGTGTCCGATTTGTGGCCTCGAGTTTGCCATTGGACAAGCCTTGGGAGGCCACATGAGAAAGCATAGAGCTGCCATTAACGATGGTTTATTGCTCACTGGTAGCAGAGATTCGTTGTCCTTCTTGAAGAATTCCAAAGATGATGAAAGCTTGAATTTGAATTTGAATTTGAATTTGAATTTAAACTTGACGCCATTGGAGGAGGATGATCTTAAGCTCAACCTGAGGACGCCCGTCCTCAATTGTTTCATTTGA 333 0.4444 MVTDLSCHHHEELVPSPTMKQQRRMHPCPICGLEFAIGQALGGHMRKHRAAINDGLLLTGSRDSLSFLKNSKDDESLNLNLNLNLNLNLTPLEEDDLKLNLRTPVLNCFI 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1197 110 ProSitePatterns Zinc finger C2H2 type domain signature. 28 48 IPR013087 -
Aed1g1197 110 PANTHER ZINC FINGER PROTEIN ZAT5 1 108 - -
Aed1g1197 110 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 108 - -
Aed1g1197 110 Pfam C2H2-type zinc finger 26 50 - -
Aed1g1197 110 SUPERFAMILY beta-beta-alpha zinc fingers 23 49 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1197 Aed-Chr1 11597296 11597628 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1197 15 101 C2H2 Transcription Factor Family AT2G28710 47.126 8.49e-14 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1197 - - gmx:100813871 150.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1197 1 11597296 11597628 Aed1g1197 1 11597296 11597628 ECH