Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1193 ATGGTTCAACAACAGGAAATTCGCAAAGGTCCCTGGACAGAACAAGAAGACTTCAAATTGGTGTCCTTTGTTGGCTTGTTTGGAGACCGTAGATGGGACTTTATAGCTAAGGTAAGAGTTGCAGATTACGCTGGGTTAATTACCTACATCCTGGTCTCAAACGTGGAAAGATCACACCCCAGGAAGAGCGTCTTGTCGTGGAGCTTCACTCTAAATGGGGAAATAGGTTTTACCCTTGGTTTCAAATCTAATCAACGTTACATTGAGACATGCAGGTGGTCAAGAATTGCGCGCAAGTTACCAGGGCGCACAGACAATGAGATTAAGAATTACTGGAGGACCCTGATGAGGAAAAAGGCTCAGGACAAAAAGAGAGGAGAAGCAGCATCACCAACACCCTCAAACAACCATGCAGTGGATCCACATGCTTCTAAGAAGGCAGGAGAAGAGAGCTTTTATGACACAGGAGGAGATGGTGAGGGTCAACAAGGGTTGTTCTCTATGGATGATATATGGAAGGATATTGACACTCTTCAACAAGGGCACAGTGAAGAGGGTTGCAACTTCTCTTGCCCACAAGTGCCTTCTCCATCATCATGGGAGTATTCCTCTGACCCACTGTGGGTGATGGATGAGGAAATAGCATCTAGCAAGTGCATTAATGACAGGTCTATATGCGATCAAAATCAGATGACATGCACACCATGA 708 0.4534 MVQQQEIRKGPWTEQEDFKLVSFVGLFGDRRWDFIAKVRVADYAGLITYILVSNVERSHPRKSVLSWSFTLNGEIGFTLGFKSNQRYIETCRWSRIARKLPGRTDNEIKNYWRTLMRKKAQDKKRGEAASPTPSNNHAVDPHASKKAGEESFYDTGGDGEGQQGLFSMDDIWKDIDTLQQGHSEEGCNFSCPQVPSPSSWEYSSDPLWVMDEEIASSKCINDRSICDQNQMTCTP 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1193 235 Pfam Myb-like DNA-binding domain 92 115 IPR001005 -
Aed1g1193 235 PANTHER TRANSCRIPTION FACTOR MYB48-RELATED 92 221 - -
Aed1g1193 235 PANTHER TRANSCRIPTION FACTOR MYB48-RELATED 4 38 - -
Aed1g1193 235 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 92 221 IPR044676 GO:0003700|GO:0006355|GO:0043565
Aed1g1193 235 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 38 IPR044676 GO:0003700|GO:0006355|GO:0043565
Aed1g1193 235 CDD SANT 11 38 IPR001005 -
Aed1g1193 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 37 IPR017930 -
Aed1g1193 235 SMART sant 8 118 IPR001005 -
Aed1g1193 235 ProSiteProfiles Myb-like domain profile. 4 116 IPR001005 -
Aed1g1193 235 SUPERFAMILY Homeodomain-like 9 117 IPR009057 -
Aed1g1193 235 Gene3D - 80 147 - -
Aed1g1193 235 MobiDBLite consensus disorder prediction 119 165 - -
Aed1g1193 235 CDD SANT 92 116 IPR001005 -
Aed1g1193 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 120 IPR017930 -
Aed1g1193 235 Gene3D - 2 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1193 Aed-Chr1 11562833 11564176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1193 4 211 MYB Transcription Factor Family AT5G59780 43.612 7.56e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed1g1193 Myb_DNA-binding 1.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1193 K09422 - gmx:100775900 215.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1193 1 11562833 11564176 Aed1g1193 1 11562833 11564176 ECH
Aed5g0425 5 3011385 3012483 Aed1g1193 1 11562833 11564176 PCT