Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1189 ATGTCTGTAGGGTCGGCGGTTAAAGACGGTGCTATAATTTTAGCAATATGTATGTTGCTCGTTATAGTGAGTGAGTGGAAAAATCTTGTGCATTTTTTGTGTAGACTTAACCGTTCAAACTCTCGTAGAAACAGGGTTGTAGAGGAAACAATTCCTAATGAGTATTCTATGGAGTTGACTCCAAACAGTAACTTTGAGTTCTCTGTGATAAACTCTCTTCCGGTGTGTCAGTTTAAGAAAGACGAGGGAGAGGGAGAACATATGCCAGTTAATGCGGACTGTGCCATTTGTTTGGGGGAATTTGAAGAAGGAGAATGGCTAAAACTTGTTCCTAATTGCACCCATGGCTTCCATGTTTCTTGCATTGACACGTGGTTTCGCTCGCATTCGAATTGCCCTCTCTGCAGAGCTTGTGTTAGTGTTAGTCATCATGACACAGAGACAGAGTACTCTGTTTCTTTGTACACGCTGATAGAATCTTCCAGGATGCATGACTTTTCCACTGAATCGCCTGCGTATTTCCAATCCATTCAAAACTTGCACGCGATTCCTGTCCTCATTAATTTGTCTTGA 573 0.4206 MSVGSAVKDGAIILAICMLLVIVSEWKNLVHFLCRLNRSNSRRNRVVEETIPNEYSMELTPNSNFEFSVINSLPVCQFKKDEGEGEHMPVNADCAICLGEFEEGEWLKLVPNCTHGFHVSCIDTWFRSHSNCPLCRACVSVSHHDTETEYSVSLYTLIESSRMHDFSTESPAYFQSIQNLHAIPVLINLS 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1189 190 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Aed1g1189 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 141 IPR013083 -
Aed1g1189 190 Pfam Ring finger domain 93 136 IPR001841 -
Aed1g1189 190 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 143 IPR044675 -
Aed1g1189 190 SMART ring_2 94 135 IPR001841 -
Aed1g1189 190 SUPERFAMILY RING/U-box 78 142 - -
Aed1g1189 190 CDD RING-H2_PA-TM-RING 93 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1189 Aed-Chr1 11524745 11525317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1189 10 141 C3H Transcription Factor Family AT1G72220 34.043 7.40e-24 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1189 - - gmx:102660592 228.409