Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1188 ATGGCTCCTAAAGAGCTAGTGTTTAATGCAGCTGATGGTTCAAAGAAGGCTGATGCAAAGGCTCAAGCCTTGAAAACTGCTAAGGCAGTTAAGTCAGGTAGTACTATTAAGAAGAAGACCAAGAAGATCCGAACATCTGTTACCTTCCATCGACCAAAGACTTTGAAAACCGATAGAAAACCCAAATATCCACGCATTAGTGCTCCACCCAGGAACAAGCTTGATCACTATCAGATATTGAAGTATCCTCTCACAACTGAGTCTGCAATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTTGACTTGCGAGCTGACAAGAAGAAGATCAAGGATGCAGTGAAGAAGATGTATGATATTCAGGCCAAGAAAGTAAACACCTTGATCAGGCCTGATGGCACCAAGAAGGCTTATGTCAGGTTGACACCTGATTATGACGCCCTGGATGTGGCCAACAAGATTGGAATTATCTAA 480 0.4208 MAPKELVFNAADGSKKADAKAQALKTAKAVKSGSTIKKKTKKIRTSVTFHRPKTLKTDRKPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1188 159 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 11 159 - -
Aed1g1188 159 TIGRFAM uL23_arch: ribosomal protein uL23 83 159 IPR019985 GO:0003735|GO:0005840|GO:0006412
Aed1g1188 159 Pfam Ribosomal protein L23 79 141 IPR013025 GO:0003735|GO:0005840|GO:0006412
Aed1g1188 159 Hamap 50S ribosomal protein L23 [rplW]. 79 159 IPR013025 GO:0003735|GO:0005840|GO:0006412
Aed1g1188 159 ProSitePatterns Ribosomal protein L23 signature. 137 152 IPR001014 -
Aed1g1188 159 PANTHER 60S RIBOSOMAL PROTEIN L23A 11 159 IPR013025 GO:0003735|GO:0005840|GO:0006412
Aed1g1188 159 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 76 152 IPR012678 GO:0003735|GO:0005840|GO:0006412
Aed1g1188 159 Gene3D - 40 159 IPR012677 -
Aed1g1188 159 Pfam Ribosomal protein L23, N-terminal domain 19 69 IPR005633 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1188 Aed-Chr1 11522318 11523737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1188 42 159 Cytoplasmic Ribosomal Protein Gene Family AT3G55280 93.220 4.44e-68 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1188 K02893 - gmx:100785534 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1188 1 11522318 11523737 Aed1g1188 1 11522318 11523737 ECH
Aed1g1188 1 11522318 11523737 Aed5g0431 5 3032373 3033836 ECH
Aed1g1188 1 11522318 11523737 Aed5g0431 5 3032373 3033836 PCT