Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1173 ATGTATGCAGCACACTCAACTTCCCCACTCTTCTCCGAACTCGGTGAATTCGAGACCCTCTCCCAACTCAACAATTCTGATACCAGTAATTACTACTACAACAACAATAGTAATAGTAATTGTAGCAGTGGCTATAGCAGTTACGTAGGGTCACCCTCCCCAACCTCTGTTGTGGCAAGTCCCAACTTGATGCAGAGGAGTGTTAGCTCCCATTCCTTCCACTCCAACAACAATGCCACTCATCCCTTTTCTGCTCTCTTTGCTGAATTGCTCGACTCCCACCACGCTCCCTTTAGAAGAGTTTGCAGCACCGGTGATCTCCAGAGGATTAATGGAATGCAACATAATCATCACAACACGGATAGCCCCTTATCAAGCGAAAGTAGTATGATCATAGAAGGAATGAGCAGAGCCTGTCGATATAGCCCGGAGGAGAAGAAGGTGAGAATTGAGAGATACAGAAGCAAGAGGAACCAGAGGAACTTCAACAAGAAAATTAAGTATGCTTGCAGGAAGACATTGGCAGACAGCAGGCCACGCATTAGAGGAAGATTTGCGAGGAATGACGAAATTGACAAGAACAGTACTACAATTCAGTGGAGCCAAATTGGTGCTGGAGAGGAAGAGGATGAAGAAGATGAGAATTGGGTCACAATGTTAGATTCCTTAGTTGCTGCAAATTTTGCTCAAGAGTCTCAAGGCACTTCCTCCTTTGGTCTATTCTATTAG 729 0.4499 MYAAHSTSPLFSELGEFETLSQLNNSDTSNYYYNNNSNSNCSSGYSSYVGSPSPTSVVASPNLMQRSVSSHSFHSNNNATHPFSALFAELLDSHHAPFRRVCSTGDLQRINGMQHNHHNTDSPLSSESSMIIEGMSRACRYSPEEKKVRIERYRSKRNQRNFNKKIKYACRKTLADSRPRIRGRFARNDEIDKNSTTIQWSQIGAGEEEDEEDENWVTMLDSLVAANFAQESQGTSSFGLFY 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1173 242 ProSiteProfiles CCT domain profile. 146 188 IPR010402 GO:0005515
Aed1g1173 242 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 242 IPR045281 GO:0009909
Aed1g1173 242 PANTHER CCT MOTIF PROTEIN 4 242 - -
Aed1g1173 242 Pfam CCT motif 148 188 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1173 Aed-Chr1 11427625 11430014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1173 142 195 C2C2-CO-like Transcription Factor Family AT5G15850 46.296 2.63e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aed1g1173 CCT 8.6e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1173 - - gmx:102661609 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1173 1 11427625 11430014 Aed1g1173 1 11427625 11430014 ECH
Aed1g1173 1 11427625 11430014 Aed5g0453 5 3206018 3208839 PCT