Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1168 ATGGAGCAGTCAGAAAAATCGCCGAAGAAAATATCATCACTAAGATCATCATTTCCGAGAGATCCACGTGGCTCACTCGAAGTGTTCAACCCAAACACTTCAACTTCAACCAACGCGCGCGTGCTTTCACAGCCTCTTTGGAAATCGCGGACGGAGTCGGAAGAAGAACCGCGACATGAAATCGCCGCCACGTCGTGGATGGCCATCAATCCGGCACAGTCGGCGAGCGGAGAATTCGGCACGGCGGCGCAGAGGGCGGCGGAGTGGGGATTGGTGCTCCGAACCGACACCGAGACCGGCAAGCCGCAGGGCGTGGCGGTGAGAAACTCCGGCGGCGAGGAACCTAATCCCGCGAAACTCACTGCTGCTGCTGCTTCGTCTTCCAGGAAGAACTCTCAGACCTCCGCCAGAACTTCCGGCGACTCCTCCGACGACGGCGGAGGCGGAGGCGGCGGGATTCCAAGAATTTCGGAGGACGTGATGGGCGCTTTATCGGCTTTTCAACAAACCTTCGTGGTTTCGGATGCTACCAAACCCGATTACCCGATCCTGTATGCGAGTGTCGGGTTCTTTAAAATGACGGGTTATACGTCCAAGGAAGTTATTGGAAGAAATTGCCGGTTTTTACAGGGTGCGGACACGAATGCCGATGAAGTGTCAAAGATAAGGGAAGCATTGCAAGCTGGGAAAATTTACTGCGGAAGGCTATTAAATTACAAGAAGGATGGGACACCTTTCTGGAACCTTCTCACTATTTCACCCATCAAGGATGAAGATGGCAAAGTCCTCAAATTTATTGGTATGCAAGTGGAGGTTAGCAAGCACACGGAGGGGTCCAAGGAGAAGACGCTACGTCCCAATGGGTTACCAGAGTCCTTGATTCGATATGATGCACGGCAGAAAGAGAAGGCTACAAGCTCAGTAACTGAGTTAGTGCAGGCCATAAAGCGCCCCCGAGCATTGAGTGAATCCGCAAGCCGTCCCTCCATCGGAAAATCATCAGGATCTTTCGAGGAGGAAAAAGAACTAGCTCAGGAACAAGACAAAAACAAAACATTAAGAAGAAAATCTGAGAGTGGAACTTCATTTGGACGCAAATCAGAAGGAGGAAATCGAATTTCTATGGAACGAATCAGTGAGCTGTCTGAAACTAAACACAAAAACTCCCACCGCCGTTCTTTCATGGGTTTAAGGAGGAAAAGTCAGTCCAATGAAGAAAGCATGGATAATGAACTTATTGAGGACGTCAGCTCTGAGAGTGAGGATGATGAGAAGCTTGATAGTTTTGAATTATTAGATGAAAAAGAAAAGCAGAGGGAAAAGCGGAAAGGTCTTGATCTTGCTACCACGCTTGAACGTATTGAGAAAAACTTTGTCATTACTGATCCAAGGCTTCCAGACAATCCTATAATCTTTGCATCGGACAGCTTCTTAGAGCTTACAGAATATAGTCGTGAAGAAATCTTGGGAAGGAATTGCAGGTTTCTGCAAGGACCTGAAACTGATCCAGCAACTGTGAAAAAAATTAGAGAGGCAATTGACAACCAAACAGAAGTTACCGTGCAACTCATCAATTATACAAAGAGTGGAAAAAAGTTCTGGAACCTGTTTCATTTGCAACCTATGCGTGATCAAAAGGGAGAAGTGCAGTATTTTATCGGTGTTCAACTTGATGGTAGTCAACATGTAGAGCCTCTTCACAACTGCATTGCAGAAGATACTGCAAAGGAGGGAGAACAATTGATAAAACAAACTGCAGAAAATGTTGATGAGGCAGTGAGAGATCTTCCGGATGCTAATAAGAAACCAGACGATTTATGGACAAATCATTCAAAAGAAGTTCATCCCAAACCTCATAGGAAGGAAGACGCCGCATGGAAAGCTATCCAGAAGGTCCTAGAAAGTGGAGAACAGATAGGCTTACAGCACTTTAGGCCAATTAAACCATTGGGGTCAGGAGATACTGGCAGTGTGCATCTGGTGGAGCTACGTGGAACTGACCAATATTTTGCCATGAAGGCTATGGATAAGGGTGTTATGCTCAATCGTAACAAGGTGCATAGAGCTTGCGCAGAGAGAGAAATCCTTGACAAGTTGGACCACCCTTTTCTACCTGCATTATATGCTTCCTTCCAGACCAAAACACACGTTTGTTTGATAACTGATTATTGTCCTGGGGGAGAACTATTCCTGCTTCTCGACCGGCAGCCAACTAAGGTTCTCAAGGAAGATGCCGTGAGATTTTATGCAGCTGAGGTAGTGATCGCATTGGAGTACCTTCATTGCCAAGGTATAATATATCGAGATTTGAAGCCAGAAAATGTGTTAATCCAGAGCAATGGGCATGTGTCCCTAACAGATTTTGACTTGTCATGTGTAACATCTAGTAAGCCACAGCTTATAATTCCAGCTACCAATTCAAAGAAGAAGAAGAAGAAGAAACAGAAAAGTCAGGAGGTTCCAATGTTTATGGCTGAACCAATGAGAGCATCAAATTCTTTTGTTGGCACGGAAGAGTACATAGCTCCGGAAATTATAACTGGTTCAGGTCACACAAGTGCTGTGGATTGGTGGGCTCTAGGTATTCTAATATACGAAATGCTTTATGGGTATACGCCATTCCGGGGGAAGACAAGACAAAAAACATTTGCAAATATTCTTCATAAGGATCTTAAATTTCCCAAAAGTAAACCGAAACCTCCCGAGCTTGATGCTCCTCTCTTACCGGAAACTGAAGAAGAAAAAGAAGCCAAAGATATAGATCCTGGGCTGGAGGATCTACAGACCAATGTTTTCTGA 2799 0.4552 MEQSEKSPKKISSLRSSFPRDPRGSLEVFNPNTSTSTNARVLSQPLWKSRTESEEEPRHEIAATSWMAINPAQSASGEFGTAAQRAAEWGLVLRTDTETGKPQGVAVRNSGGEEPNPAKLTAAAASSSRKNSQTSARTSGDSSDDGGGGGGGIPRISEDVMGALSAFQQTFVVSDATKPDYPILYASVGFFKMTGYTSKEVIGRNCRFLQGADTNADEVSKIREALQAGKIYCGRLLNYKKDGTPFWNLLTISPIKDEDGKVLKFIGMQVEVSKHTEGSKEKTLRPNGLPESLIRYDARQKEKATSSVTELVQAIKRPRALSESASRPSIGKSSGSFEEEKELAQEQDKNKTLRRKSESGTSFGRKSEGGNRISMERISELSETKHKNSHRRSFMGLRRKSQSNEESMDNELIEDVSSESEDDEKLDSFELLDEKEKQREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVKKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNCIAEDTAKEGEQLIKQTAENVDEAVRDLPDANKKPDDLWTNHSKEVHPKPHRKEDAAWKAIQKVLESGEQIGLQHFRPIKPLGSGDTGSVHLVELRGTDQYFAMKAMDKGVMLNRNKVHRACAEREILDKLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPTKVLKEDAVRFYAAEVVIALEYLHCQGIIYRDLKPENVLIQSNGHVSLTDFDLSCVTSSKPQLIIPATNSKKKKKKKQKSQEVPMFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILIYEMLYGYTPFRGKTRQKTFANILHKDLKFPKSKPKPPELDAPLLPETEEEKEAKDIDPGLEDLQTNVF 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1168 932 MobiDBLite consensus disorder prediction 906 923 - -
Aed1g1168 932 ProSiteProfiles Protein kinase domain profile. 644 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1168 932 MobiDBLite consensus disorder prediction 598 623 - -
Aed1g1168 932 CDD PAS 458 558 IPR000014 -
Aed1g1168 932 ProSiteProfiles PAS repeat profile. 443 516 IPR000014 -
Aed1g1168 932 PANTHER PHOTOTROPIN-1 106 897 - -
Aed1g1168 932 SUPERFAMILY PYP-like sensor domain (PAS domain) 459 558 IPR035965 -
Aed1g1168 932 CDD STKc_phototropin_like 642 891 - -
Aed1g1168 932 ProSiteProfiles PAS repeat profile. 156 229 IPR000014 -
Aed1g1168 932 CDD PAS 183 272 IPR000014 -
Aed1g1168 932 MobiDBLite consensus disorder prediction 94 155 - -
Aed1g1168 932 ProSiteProfiles PAC domain profile. 517 571 IPR000700 -
Aed1g1168 932 MobiDBLite consensus disorder prediction 370 390 - -
Aed1g1168 932 MobiDBLite consensus disorder prediction 893 932 - -
Aed1g1168 932 MobiDBLite consensus disorder prediction 27 48 - -
Aed1g1168 932 SMART serkin_6 644 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1168 932 MobiDBLite consensus disorder prediction 408 429 - -
Aed1g1168 932 ProSitePatterns Protein kinases ATP-binding region signature. 650 673 IPR017441 GO:0005524
Aed1g1168 932 SMART pac_2 233 275 IPR001610 -
Aed1g1168 932 SMART pac_2 520 562 IPR001610 -
Aed1g1168 932 MobiDBLite consensus disorder prediction 318 432 - -
Aed1g1168 932 Gene3D PAS domain 170 326 - -
Aed1g1168 932 Coils Coil 336 356 - -
Aed1g1168 932 PANTHER FLIPPASE KINASE 1-RELATED 106 897 - -
Aed1g1168 932 Gene3D Phosphorylase Kinase; domain 1 643 727 - -
Aed1g1168 932 ProSiteProfiles PAC domain profile. 230 284 IPR000700 -
Aed1g1168 932 Pfam Protein kinase domain 646 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1168 932 Gene3D PAS domain 432 596 - -
Aed1g1168 932 MobiDBLite consensus disorder prediction 1 66 - -
Aed1g1168 932 MobiDBLite consensus disorder prediction 121 142 - -
Aed1g1168 932 SMART pas_2 445 514 IPR000014 -
Aed1g1168 932 SMART pas_2 158 227 IPR000014 -
Aed1g1168 932 ProSitePatterns Serine/Threonine protein kinases active-site signature. 765 777 IPR008271 GO:0004672|GO:0006468
Aed1g1168 932 SUPERFAMILY Protein kinase-like (PK-like) 630 898 IPR011009 -
Aed1g1168 932 MobiDBLite consensus disorder prediction 334 362 - -
Aed1g1168 932 Gene3D Transferase(Phosphotransferase) domain 1 728 896 - -
Aed1g1168 932 SUPERFAMILY PYP-like sensor domain (PAS domain) 177 269 IPR035965 -
Aed1g1168 932 TIGRFAM sensory_box: PAS domain S-box protein 468 558 IPR000014 -
Aed1g1168 932 TIGRFAM sensory_box: PAS domain S-box protein 183 276 IPR000014 -
Aed1g1168 932 Pfam PAS domain 466 558 IPR000014 -
Aed1g1168 932 Pfam PAS domain 177 273 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1168 Aed-Chr1 11381934 11394390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1168 1 932 AGC Kinase Gene Family AT3G45780 66.045 0.0 1251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Aed1g1168 Pkinase 3.6e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1168 K20715 - gmx:100817565 1613.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1168 1 11381934 11394390 Aed1g1168 1 11381934 11394390 ECH
Aed1g1168 1 11381934 11394390 Aed5g0458 5 3280038 3291733 PCT