Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1161 ATGTTGGATCTTAATCTGAATGCCGAGTCGACTCAGCACGACGACTCGCTCGTGTTGTTGGACAAGTTTCCCGAAGCATCTTCGGGAACTTCGAATTCCTCCATCGTGAATGCGGAGGGGTCGAGCAACGAGGACTCGTGCTCCACACGCGCCGGCGACGTGTTCACCTTCAATTTCGGAATCCTTAAGGTGGAAGGTGCGAACGACGTCGTTGCGGTGGCGACGAAGGAGCTGTTTCCGGCGAGCGCGGAGACCTGGCAGGGGCAGAGTTCGACGTCGTCGTTTCAGGCTAGAAAGAGTTTGATGGATCTCTCGTTGGATCATCAAAACGGAGAGGTGAAGGTTGTTCAGGTTCAGCAACAGCCTCAGGTGAAGAAGAGTAGGAGAGGTCCAAGGTCTCGGAGCTCTCAGTACAGAGGAGTCACCTTCTACAGAAGGACCGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTAGGTGGATTTGACACCGCTCATGCTGCTGCTAGGGCCTATGATCGAGCTGCTATTAAGTTCAGGGGGCTTGATGCTGATATCAATTTTAATCTAGTTGATTATGAGGATGATTTAAAACAGATGAAGAATCTTTCCAAAGAGGAGTTCGTGCACATACTCCGCCGCCACAGTACTGGTTTCTCGAGGGGGAGTTCGAAATACCGGGGAGTGACGCTTCACAAATGTGGCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGGCTTATGACAAGGCAGCTATCAAGTGCAATGGAAGAGAGGCTGTGACTAACTTTGAGCCTAGTACATATGAGAGCGAGATGAAACCTGAAGCTATTAATGAAGGTGGCAGTCACGATCTTGACCTTAATTTGGGCATAGCGACCCCAGGACATGGTCCCAAAGAAAACAGGGGGCATCTTCAGTTCCAGCCCATCCCTTACAACACCCTTCCCGGAAGAAGTTCAAGGATGGAGACTAATGTCAATTCGGTTATTGGTGATCCGTCTTTGAAAAGGCTGGTTGTAACTCAAGAGCGTCCTGTATGGAATGCCGCATATTCCACTTTCTTTCCCAATCTGGAAAGAGCAGAGAGAATGGGCATAGATCCTTCAAAAGGAGTCCCCAACTGGGAGTGGCAAACACATGGCCCAGTACCACCGTTCTCTACTGCAGCATCATCAGGATTCTCAATTTCAGCTACTTTTCCATCAACTGCCATCTTTCCAACAAAATCCATGAACTCAATTCCCCAGAGCCTCTGTTTCACTTCACCCAGCACACCAGGTAGCAATGCACCTCAATTCTATTACGAGGTGAAGTCCCCGAAGGCACCTTCCTAG 1356 0.4956 MLDLNLNAESTQHDDSLVLLDKFPEASSGTSNSSIVNAEGSSNEDSCSTRAGDVFTFNFGILKVEGANDVVAVATKELFPASAETWQGQSSTSSFQARKSLMDLSLDHQNGEVKVVQVQQQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVDYEDDLKQMKNLSKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIKCNGREAVTNFEPSTYESEMKPEAINEGGSHDLDLNLGIATPGHGPKENRGHLQFQPIPYNTLPGRSSRMETNVNSVIGDPSLKRLVVTQERPVWNAAYSTFFPNLERAERMGIDPSKGVPNWEWQTHGPVPPFSTAASSGFSISATFPSTAIFPTKSMNSIPQSLCFTSPSTPGSNAPQFYYEVKSPKAPS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1161 451 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 439 - -
Aed1g1161 451 MobiDBLite consensus disorder prediction 26 47 - -
Aed1g1161 451 CDD AP2 228 273 IPR001471 GO:0003700|GO:0006355
Aed1g1161 451 CDD AP2 137 192 IPR001471 GO:0003700|GO:0006355
Aed1g1161 451 ProSiteProfiles AP2/ERF domain profile. 137 193 IPR001471 GO:0003700|GO:0006355
Aed1g1161 451 SUPERFAMILY DNA-binding domain 228 272 IPR016177 GO:0003677
Aed1g1161 451 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE2 1 439 - -
Aed1g1161 451 SUPERFAMILY DNA-binding domain 136 193 IPR016177 GO:0003677
Aed1g1161 451 Pfam AP2 domain 137 185 IPR001471 GO:0003700|GO:0006355
Aed1g1161 451 SMART rav1_2 137 199 IPR001471 GO:0003700|GO:0006355
Aed1g1161 451 SMART rav1_2 229 277 IPR001471 GO:0003700|GO:0006355
Aed1g1161 451 MobiDBLite consensus disorder prediction 117 138 - -
Aed1g1161 451 Gene3D AP2/ERF domain 136 195 IPR036955 GO:0003700|GO:0006355
Aed1g1161 451 Gene3D AP2/ERF domain 228 272 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1161 Aed-Chr1 11326781 11331395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1161 1 412 AP2-EREBP Transcription Factor Family AT5G60120 47.629 3.04e-93 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aed1g1161 AP2 2.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1161 K09284 - gmx:100777102 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1161 1 11326781 11331395 Aed1g1161 1 11326781 11331395 ECH
Aed1g1161 1 11326781 11331395 Aed5g0466 5 3361096 3365922 ECH
Aed1g1161 1 11326781 11331395 Aed5g0175 5 1258962 1261902 PCT