Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1147 ATGGATTTGGTAGCCACTTGCAAGGATCTTGTTGATAGGATATTAGCTATTCTCTCAGAGGACCAAGTTTCCAAATTGTGGACCAAGAGGAATGCTGTTGGAAAACAACAGGTGGCCAAATTAGTGGATGACACATATAGAAAATTGCAGGTATCTGGGGCCATTGATCTAGCATCAAAGGGACAGGGTGCCTCAGATAGCAGTAATGTGAAAATTAAAGGTGAAATTGATGATTCCTTTCAATCAGATACGAAGATTCGCTGTCTCTGTGGAAATGTATTGGATACAGAGCCATTGGTCAAGTGTGAAGATACAAGATGCCATGTGTCGCAGCACATCAACTGTGTTATTATGCCAGAGAAACCTATGGATGGAATCCCACCCGTTCCTGATAAATTCTACTGTGAAATATGTCGACTTGATCGGGCAGACCCGTTTTATGTTTCAGTGACACACCTTTTATTTCCAGTGAAGTTGACCACTACCAATATTCCAACTGATGGAACCAACCCAGTACAGAGTGTGGAAAGAACGTTTCAACTCACGAGAGCAAACAAGGAGTTAATATCAAAATCAGAATATGATGTTCAGGTTTGGTGTATGCTTTTGAATGACAAGGTTTCATTTAGGATGCAATGGCCACAATTTACAGATCTAAAGATCAATGGTCTTCCTGTTCGTGCAATTAACAGACCTGGTTCACAGTTGCTTGGGGCTAATGGTCGTGACCCTGGTCCTGTTATCACTCCATATACAAAGGACGGAAATAATAAGATTTCCTTAACAGGGTGTGATGCTCGCATATTTTGTTTAGGGGTCCGTATTGTTAAGAAGCTCAGCATGCCAGAGGTCCTAAGCATGATTCCAGAGGAGTCTGACGGTGAGCGTTTTGAAGATGCTCTTGCACGTGTCTGTTGTGTTGGGGGTGGTAATGCAAATGATAATGCTGATAGTGATAGTGATTTGGAAGTGGTTTCAGATACTTTTGGCATCAATCTCCGTTGCCCAATGAGTGGTTCAAGAATGAAGATTGCAGGAAGATTCAAACCTTGTGTTCACATGGGCTGTTTTGATCTTGAAGTTTTTGTGGAAATGAATGAACGGTCAAGGAAGTGGCAGTGCCCCATTTGCCTTAAAAATTATGCTTTGGAGAATATCATTATTGACCCTTACTTCAATCGCATCACCAATCTGGTAATGAAAAATTGTGGAGAAGAAATCGCAGAGGTCGAGGTGAAGCCTGATGGTTGTTGGCGTGTTAAGGCTAAGAATGAAAGTGAACGCCGGGAGTTGGGGACTCTTGCTCAATGGCACCGTCCTGATGGATCCCTCTTTGTTTCTACTGATGAAGTCAATAGAATGGAAAATTTAAAGCTTAAACAGGAAGTTGTTTCAGATGGTCCTATTGGTGGTTTAAAACTTGGCATTAGGAAGAATAGTAATGGTATTTGGGAAGTCAGCAAACCTGAGAACACAAACACCTCTTCTGGTAATAGATTGAATGAGGATTTTGAAAATCATGAACATGTTATTATTCCAATGAGCAGCAGTGACACTGGAAGTGGCAGGGATGAAGATGATCGTAGTGTAAATCAGGGTGGTGGTGGGCATATTGATTATTCTACTAACAATGGGATTGAGATGGATTCTGTGTTTAACAATAATATTGATTCAGCTTATGGATATACTGTTAATAACGTTTCTGCTCCGATGGGTGATGCAGAAGTTATTATTCTTAGTGATTCAGAAGAAGACAATGATGTATTGATGTCTCCTACTCCTATATCTGGGTACAAAAATAGTCAAACTAGTGCTGCAGTTGATGTTTACTCAGTGCTACAGCCTGGAATTATTGATCCATATACGGAAGATCACAATCCCGGTGGAAATCCAGGCTTGGGAGTTTTTAATACTCCTAGTGAAGATGATTTTGGGATGCCCTCCCTCTGGCAATCTGGAACTCCGACAGTCTCAGGATTCCAATTATTCAGTTCTGAAGTGGAGGAGGATGTGTCAGATGCATTAATTGATTTGCATCATGGCAATATTAATTGCTCCTCATCACTGAATGGTTATACGTTGGCTCCAGATACTGCTTTGGGATCTAGCACTCTTGTACCAGATTCCTCAGCAGGTCGACCTGATGATGATTTAAATGGTGGCTTGGTTGACAATCCACTGGCATTTCCCAGAGAAGATCCTTCCCTTCAGATTTTTCTCCCTACAAAACCAGCAGAATCATCTATGCAAAATGAATCGAGAGAACATGCAGACATGTCAAATGGCGTCTTTACTGAGGATTGGATCTCTCTTAGTCTTGGAGGTGGTGCCGGTGGCCATAATGATGACACTTCCACTGCAAATGTATTGAATTCCAGACCACAAATTACACCCAGAGTAGATGCCAGAGATTCTTTGACAGATACCGTGATTCTTATATGCAATGTTGCATTTTTCTCCTCCCTTTATCCACTCATCATTCCTTCTTATCCAGCAGCTCCTTTGCTTCTTGGTATGAATGATGTCAGACCTGACAAGGCAATTAGACAAAGATCAGATAGCCCTTTCTCCTTTCCCCGCCAAAAACGTTCAGTAAGGCCCCGCCCGTATCTTTCTATTGATTCAGATTCCGACTAG 2637 0.4171 MDLVATCKDLVDRILAILSEDQVSKLWTKRNAVGKQQVAKLVDDTYRKLQVSGAIDLASKGQGASDSSNVKIKGEIDDSFQSDTKIRCLCGNVLDTEPLVKCEDTRCHVSQHINCVIMPEKPMDGIPPVPDKFYCEICRLDRADPFYVSVTHLLFPVKLTTTNIPTDGTNPVQSVERTFQLTRANKELISKSEYDVQVWCMLLNDKVSFRMQWPQFTDLKINGLPVRAINRPGSQLLGANGRDPGPVITPYTKDGNNKISLTGCDARIFCLGVRIVKKLSMPEVLSMIPEESDGERFEDALARVCCVGGGNANDNADSDSDLEVVSDTFGINLRCPMSGSRMKIAGRFKPCVHMGCFDLEVFVEMNERSRKWQCPICLKNYALENIIIDPYFNRITNLVMKNCGEEIAEVEVKPDGCWRVKAKNESERRELGTLAQWHRPDGSLFVSTDEVNRMENLKLKQEVVSDGPIGGLKLGIRKNSNGIWEVSKPENTNTSSGNRLNEDFENHEHVIIPMSSSDTGSGRDEDDRSVNQGGGGHIDYSTNNGIEMDSVFNNNIDSAYGYTVNNVSAPMGDAEVIILSDSEEDNDVLMSPTPISGYKNSQTSAAVDVYSVLQPGIIDPYTEDHNPGGNPGLGVFNTPSEDDFGMPSLWQSGTPTVSGFQLFSSEVEEDVSDALIDLHHGNINCSSSLNGYTLAPDTALGSSTLVPDSSAGRPDDDLNGGLVDNPLAFPREDPSLQIFLPTKPAESSMQNESREHADMSNGVFTEDWISLSLGGGAGGHNDDTSTANVLNSRPQITPRVDARDSLTDTVILICNVAFFSSLYPLIIPSYPAAPLLLGMNDVRPDKAIRQRSDSPFSFPRQKRSVRPRPYLSIDSDSD 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1147 878 ProSitePatterns Zinc finger PHD-type signature. 88 138 IPR019786 -
Aed1g1147 878 ProSiteProfiles Zinc finger SP-RING-type profile. 318 401 IPR004181 GO:0008270
Aed1g1147 878 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 8 787 - -
Aed1g1147 878 MobiDBLite consensus disorder prediction 513 542 - -
Aed1g1147 878 MobiDBLite consensus disorder prediction 849 878 - -
Aed1g1147 878 Pfam MIZ/SP-RING zinc finger 331 379 IPR004181 GO:0008270
Aed1g1147 878 CDD PHD_Bye1p_SIZ1_like 87 138 - -
Aed1g1147 878 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 144 IPR013083 -
Aed1g1147 878 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 8 787 - -
Aed1g1147 878 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 309 420 IPR013083 -
Aed1g1147 878 SMART PHD_3 87 139 IPR001965 -
Aed1g1147 878 SUPERFAMILY FYVE/PHD zinc finger 80 142 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1147 Aed-Chr1 11206887 11216632 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1147 - K22403 gmx:100811996 1503.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1147 1 11206887 11216632 Aed1g1147 1 11206887 11216632 ECH
Aed1g1147 1 11206887 11216632 Aed5g0485 5 3534732 3546244 PCT