Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1146 ATGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCATGCTGATTTTGTTGTGCCCTACCAAAAATATATCAAAAGTATCAAGAATCCAGTGACCATGGGGACAAGATTCAAAATGAAATTTGAAATGGATGAATCTCCAGAAAGAAGGTGTACTAGTGGTATAGTGACTGGAATGAGTGATTTGGATCCCTATAAATGGCCTAAGTCAAAATGGAGGTGCTTGATGGTTAGATGGGATGAGGATATTGAGATTAATCATCAAGATAGAGTATCTCCATGGGAGATAGATCCTTCTGCGTCTCTCCCTCCCTTGAGCATTCAATCCTCCAGAAGGCTGAAGAAGCTGAGGCCAAGTCTCCAGGCTGCCACACCCAGTCACCTCACCACTGCAGGAGGCAGTGGGTTTATGGACTCTGAGGAGTCAGTAAGATCATCCAAGGTCTTGCAAGGTCAAGAAAATACAGGTTTTATGTCACTATATTATGGATGTGACACAGTAACTAAGCAGCCAGAATTTGAGATCAGATCTCCAAGTCATCCTAATCTTGCACCAACTGGAGTGAGAAAGATTGCTGCTGCTGCTGAGTTTCTGAGGGTTCACCCTTCTAGTTATGCGGGCTTCACGGAAACTAACAGGTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTCCATTTAGATCCCTGACAGGAAAAGTTGATTTGAACTTTGGTTCTTGGGGAAAACCCAATGCCAGTTACACAAATTACAGCCTGCATCAGGCAACCAAAACTTCTAATTTTCACACTTTAGGACCAGAAGTTATTCAAACTGCATATTTTCCTTATGCTGATATTCACAAAGCTGGCCAAGGAAGCAGCATGTTGTGCTCCAAACGACAGAATATCCCATTTAACACTCCTTCCACTCAGTCAGGGATCATGAGAAATGAAGTTGGACGGTCAGACATCACAATCCAAAATGAGCAGGACAATATTTCTGGTGCTGCTGCTTCTTTAGGGGGGAACATGAGGATTCCCAATGATGACAATTTCAAGGGGAAGGTAAATGCTTGTAAACTATTTGGATTTTCCTTGTCCGGGGAAACTAGCACCCAAAATATACAGAACTCAGCTAAAAGAAGTTGCACCAAGGTTCACAAGCAAGGTAGCTTAGTTGGAAGAGCCATTGATCTGTCAAGATTGAGCAGCTACAATGAGCTGCTGATTGAACTAGAGAGACTATTTAGCATGGAAGGCCTTCTAATAGATCCTAATAAGGGATGGAGAATCCTTTACACTGACAGTGAAAATGACATCATGGTTGTGGGGGATGACCCGTGGCATGAGTTCTGCGATGTGGTAACCAAGATTCATATACATACAGAAGAAGAAGTGGAGAAGATGACAATTGGGATGATGATCAATGATGATACCCAGTCCCAGAGCTGTTTGGAACAAGAGGCGCCAGTGATGATGGAGGCTTCAAAGTCTTCCTCCGTGGGGCAGCCAGATTCTTCTCCAACGGTGGTTAGAATGTAG 1518 0.4328 MFHVFYSPRASHADFVVPYQKYIKSIKNPVTMGTRFKMKFEMDESPERRCTSGIVTGMSDLDPYKWPKSKWRCLMVRWDEDIEINHQDRVSPWEIDPSASLPPLSIQSSRRLKKLRPSLQAATPSHLTTAGGSGFMDSEESVRSSKVLQGQENTGFMSLYYGCDTVTKQPEFEIRSPSHPNLAPTGVRKIAAAAEFLRVHPSSYAGFTETNRFPRVLQGQEICPFRSLTGKVDLNFGSWGKPNASYTNYSLHQATKTSNFHTLGPEVIQTAYFPYADIHKAGQGSSMLCSKRQNIPFNTPSTQSGIMRNEVGRSDITIQNEQDNISGAAASLGGNMRIPNDDNFKGKVNACKLFGFSLSGETSTQNIQNSAKRSCTKVHKQGSLVGRAIDLSRLSSYNELLIELERLFSMEGLLIDPNKGWRILYTDSENDIMVVGDDPWHEFCDVVTKIHIHTEEEVEKMTIGMMINDDTQSQSCLEQEAPVMMEASKSSSVGQPDSSPTVVRM 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1146 505 MobiDBLite consensus disorder prediction 121 140 - -
Aed1g1146 505 MobiDBLite consensus disorder prediction 112 140 - -
Aed1g1146 505 MobiDBLite consensus disorder prediction 485 505 - -
Aed1g1146 505 Gene3D - 30 102 - -
Aed1g1146 505 Pfam Auxin response factor 1 74 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aed1g1146 505 ProSiteProfiles PB1 domain profile. 373 455 IPR000270 GO:0005515
Aed1g1146 505 PANTHER AUXIN RESPONSE FACTOR 1 486 - -
Aed1g1146 505 Gene3D - 369 462 - -
Aed1g1146 505 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 486 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aed1g1146 505 SUPERFAMILY CAD & PB1 domains 376 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1146 Aed-Chr1 11191457 11196684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1146 1 505 B3 DNA Binding Superfamily AT5G60450 51.479 2.30e-151 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1146 - - gmx:100812909 897.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1146 1 11191457 11196684 Aed1g1146 1 11191457 11196684 ECH
Aed1g1146 1 11191457 11196684 Aed5g0488 5 3565726 3573946 PCT