Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1141 ATGTCCGTAATCGACATTCTCTTCCGCGTCGACAACATATGCCACAAATATGACAAATACGACATCGATAAGCAGGGAGAGCTCAACGCCTATGGTAATGACGACTTTGCTCGCCTCTACGAGGCTGTTGACACCAGCATTCAAACCGCTCTCGATAAATCGGAGCTTGCTTCCACGGAGACAAACAGGGCAGCTGCTGCAGCTATGAATGCAGAGGTTCGTCGAGCCAAGGGTAGACTCGCCGAAGACATTCCTAAACTCCGCAAATTGGCGCAAAAAAGCAATACTATCTATGATGATGAACAGCTTAAGGGTATGACAAAAGAGGACATAGCCGTTCGTCAGGATCTTGTGCTGGCATTGCCGGAGAGAATCCTAGCAATACCAGATGGTATTTCTGGTGCGGGTATTCAAGCTGCAAGATGGACCGCTTCCTCATCTCAGCCGCATATCAAGTTTGATTCACCAGACGGACATGTTGACAGTGAGTATTTCCAACAAACTGAAGAATCCAGTCAATTCAGACAAGAGTATGAGATGCGCAGGACCAAACAGGATGAAGGGCTTGATTTCATATTAGAGGGATTGGATACCTTGAAGAATCTGGCCCGTGATATGAATGAGGAATTGGATCGCCAAGTTCCTCTAATGGATGAAATTGACTCAAAGGTGGATAGGGCAGCAGCTGATGTGAGAAACACTAACGTAAGGCTGAAGAAAACTCTCACTGAGATAAGGTCTAGTCGAAATTTCTGCATCGACATTGTTCTGCTCTGTGTTCTTCTTGGAGTCGTTATGTATTTATACAAGTAA 813 0.4551 MSVIDILFRVDNICHKYDKYDIDKQGELNAYGNDDFARLYEAVDTSIQTALDKSELASTETNRAAAAAMNAEVRRAKGRLAEDIPKLRKLAQKSNTIYDDEQLKGMTKEDIAVRQDLVLALPERILAIPDGISGAGIQAARWTASSSQPHIKFDSPDGHVDSEYFQQTEESSQFRQEYEMRRTKQDEGLDFILEGLDTLKNLARDMNEELDRQVPLMDEIDSKVDRAAADVRNTNVRLKKTLTEIRSSRNFCIDIVLLCVLLGVVMYLYK 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1141 270 PANTHER SYNTAXIN 1 269 IPR045242 -
Aed1g1141 270 Gene3D - 179 240 - -
Aed1g1141 270 Pfam SNARE domain 216 265 IPR000727 -
Aed1g1141 270 PANTHER SYNTAXIN-72 1 269 - -
Aed1g1141 270 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 179 241 IPR000727 -
Aed1g1141 270 CDD SNARE_Qc 184 240 - -
Aed1g1141 270 SUPERFAMILY SNARE fusion complex 172 240 - -
Aed1g1141 270 ProSitePatterns Syntaxin / epimorphin family signature. 185 224 IPR006012 GO:0005484|GO:0006886|GO:0016020
Aed1g1141 270 SMART tSNARE_6 174 241 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1141 Aed-Chr1 11157602 11159056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1141 1 269 SNARE and Associated Proteins AT3G09740 64.576 3.07e-126 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1141 K08506 - gmx:100777251 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1141 1 11157602 11159056 Aed1g1141 1 11157602 11159056 ECH