Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1139 ATGGCTACCAACCGATTCCTCTGCGAAGTGTGCAACAAGGGTTTTCAGAGAGACCAGAACCTACAGCTGCACCGGCGAGGGCACAACTTACCGTGGAAGCTGCGACAGAGATCGAAAGACGAGGTGGTGAAGAAGAAGGTGTACGTTTGTCCAGAGAAGAGTTGCGTGCACCACGACCCTTGCAGAGCCCTGGGAGACCTCACTGGGATCAAAAAGCACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGAAAAGTGCTCCAAGAAATACGCTGTTCAATCTGACTGGAAAGCCCATAACAAGATTTGTGGGACTAGACAGTACAAATGTGACTGTGGCACAATATTCTCCAGGAAGGACAGCTTTGTAACGCATAGAGCCTTTTGTGACGCGATGGCGGAACAAAATGCGAGACTTCCGGCAGTTTTTTCAAACCTTGGAAACGAAATTTTGATGAATGCTGCTCAAGCTCCAAGAGTAATGCCTCAGGGTTTACAATTACATGGGTTTCATTCAGAGTTTGGTGGGCCAGGCTCAGAAGCATACATGGCGAATTTTGCGGATGTGAACCATGAGCATAATAAGCTAAGGATGCCACTATGGCTGGACCAGACCAATTCTCTTCAGCTTAATCATCCTCTAAGCGTTTCAACCAATTCTTCGAGTTTGTTCTCACCAGGAACAGCCTTGGCTGAAGCAAACAACATGTTTGGGACATCATCGTCTTCGCAGGGACAGTGGCTGAATTACCGATACCCAGAAGCATCATCATTTACACATGGGCTGAAGCTAGAGGCGCAAGAAGAAAACAAAGGGGAGTTGTCGCATAGCGTAGGCTCTTTGTACCCAAGTCACATGGAATCTACGAGGATGAGTGGTAACAATTCGGCCGCCTTCGACAACTCCAACTTTGGCTTGTTGGATCCGAATAACCGCAACAACAATGTTGTCGAAATATTCAACCACATGGTGGTGAATGTGAATTCCCAAGCCACGAACATGGTGATGCCGCGGATTCAAGAGTGGGAGAGTACTGGAGAACCAGAATTAATGGAGAAGCGACAACTACATACTCATACTGAAGACCACTTAACCAAAGACTTCATGGGTGTTGGAGATGGGTCATTAAGCAGGCAAATGGGACCGGTCATGAACCTGCAGAGCCAGTTCCGTGGAAATTATAACTGA 1194 0.4749 MATNRFLCEVCNKGFQRDQNLQLHRRGHNLPWKLRQRSKDEVVKKKVYVCPEKSCVHHDPCRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHNKICGTRQYKCDCGTIFSRKDSFVTHRAFCDAMAEQNARLPAVFSNLGNEILMNAAQAPRVMPQGLQLHGFHSEFGGPGSEAYMANFADVNHEHNKLRMPLWLDQTNSLQLNHPLSVSTNSSSLFSPGTALAEANNMFGTSSSSQGQWLNYRYPEASSFTHGLKLEAQEENKGELSHSVGSLYPSHMESTRMSGNNSAAFDNSNFGLLDPNNRNNNVVEIFNHMVVNVNSQATNMVMPRIQEWESTGEPELMEKRQLHTHTEDHLTKDFMGVGDGSLSRQMGPVMNLQSQFRGNYN 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1139 397 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Aed1g1139 397 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 379 - -
Aed1g1139 397 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Aed1g1139 397 PANTHER ZINC FINGER PROTEIN JACKDAW-LIKE ISOFORM X1 1 379 - -
Aed1g1139 397 SMART c2h2final6 6 28 IPR013087 -
Aed1g1139 397 SMART c2h2final6 83 103 IPR013087 -
Aed1g1139 397 SMART c2h2final6 48 78 IPR013087 -
Aed1g1139 397 SUPERFAMILY beta-beta-alpha zinc fingers 5 103 IPR036236 -
Aed1g1139 397 Gene3D Classic Zinc Finger 4 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1139 Aed-Chr1 11145006 11146454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1139 1 173 IDZ Gene Family AT5G03150 71.585 1.77e-92 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed1g1139 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1139 K25870 - gmx:100811687 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1139 1 11145006 11146454 Aed1g1139 1 11145006 11146454 ECH
Aed1g1139 1 11145006 11146454 Aed5g0493 5 3610001 3611750 PCT