Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1134 ATGGTTTGTAGGCCGTTTCCTGTTAAGGAGACTTGCAAACTTGATCGTTCAGAGGATGAAAATGGGAACAAGATGATAAATGAATATGTTCGAGAGTATAAAATTGGTTCTGGAAGCTATGGCAAAGTGGCTCTCTATCAAAGTTCTGTTGATGGAAAGCATTATGCAATTAAGTCCTTTCACAAGTCTCATTTACAAAAGCTTCGAGTTGCACCATCTGAGACTGCCATGACTGATGTTCTACGTGAGGTACTGATAATGAAAATGGTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGACCCAGAGTCGGATGACTTCTACATGGTACTTGAATATGTGGAAAGCAAATGGGTGTGTGAGGGTACAGGTCGTGCTTGTGCAATAGGTGAAGAGACTGCTAAGAAATACGTGCGTGATATAGTCTCAGGATTAATATATCTCCATGCTCATAATATAGTGCATGGGGATATAAAACCTGATAATCTGTTGATTAGTCGGCATGGCACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGGATGGCAATGATGAACTTCGTCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGTTGTTTAGGTCTTACTTATCATGGTAAAGCTTCTGACACGTGGGCAGTAGGAGTTACGTTGTACTGCATGATATTGGGTGAATACCCATTTCTTGGAGACACACTTCAAGACACGTATGACAAAAAATCTGAGCTTACGGTTTTCCTCCTTATCTATATCCAGATAGTCAATGATCCTTTAGATCTGCCAGATGACATTAACCCCCAGTTAAAGAACTTAATTGAAGGATTACTATGCAAAGACCCAGAATTAAGGATGACATTGGGCGTTGTTGCTGAGCATATCTGGGTTATTGGAGATGATGGGCCACTTCCTGGGTACTTATGTTGGTGCAAACGCAAGAGCATGTTGACTGAAGATTCTGATGGGAGCGATATACTTGCTTGA 1005 0.4139 MVCRPFPVKETCKLDRSEDENGNKMINEYVREYKIGSGSYGKVALYQSSVDGKHYAIKSFHKSHLQKLRVAPSETAMTDVLREVLIMKMVEHPNIVNLIEVIDDPESDDFYMVLEYVESKWVCEGTGRACAIGEETAKKYVRDIVSGLIYLHAHNIVHGDIKPDNLLISRHGTVKIGDFSVSQAFEDGNDELRRSPGTPVFTAPECCLGLTYHGKASDTWAVGVTLYCMILGEYPFLGDTLQDTYDKKSELTVFLLIYIQIVNDPLDLPDDINPQLKNLIEGLLCKDPELRMTLGVVAEHIWVIGDDGPLPGYLCWCKRKSMLTEDSDGSDILA 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1134 334 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Aed1g1134 334 Pfam Protein kinase domain 29 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1134 334 Gene3D Phosphorylase Kinase; domain 1 23 126 - -
Aed1g1134 334 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 1 331 - -
Aed1g1134 334 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 1 331 - -
Aed1g1134 334 ProSitePatterns Protein kinases ATP-binding region signature. 35 58 IPR017441 GO:0005524
Aed1g1134 334 SUPERFAMILY Protein kinase-like (PK-like) 22 311 IPR011009 -
Aed1g1134 334 Gene3D Transferase(Phosphotransferase) domain 1 128 309 - -
Aed1g1134 334 CDD STKc_LKB1_CaMKK 35 303 - -
Aed1g1134 334 SMART serkin_6 29 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1134 334 ProSiteProfiles Protein kinase domain profile. 29 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1134 Aed-Chr1 11114769 11120887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1134 24 302 CBL-interacting serine-threonine protein kinases AT5G35410 30.108 1.24e-37 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Aed1g1134 Pkinase 4e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1134 K00908 - gmx:100776013 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1134 1 11114769 11120887 Aed1g1134 1 11114769 11120887 ECH