Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1133 ATGGGGAATATCGGAAGCCGGAGGAGGAGGAGGCGCCACCCCACACCACCACCACAACTAGACGCAAACTCAAACTACTACGTTGCAGCTCGTCTTCCACACTACCCCATCACCCTTCTTCCTCCTTATCACAACTACCCTCAACAATCCCTTTCACCACCTTCTCTTCACCACGAGAAAGCTGTCACCATCAGAAATGATGTCAATATCAAGAAGGACACTCTTCGGATGGAGCCTGATCAACACGACCCTCACCATTTTCTTGTCACTTTCACCTTTGATGCCACTGCTCCTGGATGCATTACAGTGATGTTTTTTGCCAAGGAAACTTTAGATGGTAAGCTGATAGCAGTAGAGAAAAGCTTGCTCAAACAAATATCAATGCCTTTTCAGCAAGGTCTTTGTCAGAAATTCAGTCAACCTTCTGGAACTGGCATTGAAATCTCAATGTTAGAGGAGACAGGACTAACCAAAGAAGGTGATGCAGAATTTTATCCTCTTGTGCTGAAAGCCGAGGCTCGACCTTTAAACCGTTATGAAAATGAGGGAAACTCATCTTCTCAAATTACTTTGGTTAGTTTTGAAAAGAGGGAGAGGGGTGAGTACAAGGTTCAAGTAATGAAACAGGTTCTCTGGGTCAATGGGAAGAGGTATGAACTGCAGGAGATATATGGCATTGGGAATGTTAATGATGGTGATGGCCATGAATCTGGTGGAGATTGTGTAATTTGTTTGTCAGAACCTCGAGACACAACTGTCCTCCCTTGCCGACACATGTGCATGTGCAGTGGCTGTGCTAATCTTCTGAAAGTTCATACAGCCAACTGCCCCATCTGCCGGCATCCAGTTGAGAGGCTTTTGAAAATTAAAGTAAATGATGGATATGGTGATCAATGA 897 0.447 MGNIGSRRRRRRHPTPPPQLDANSNYYVAARLPHYPITLLPPYHNYPQQSLSPPSLHHEKAVTIRNDVNIKKDTLRMEPDQHDPHHFLVTFTFDATAPGCITVMFFAKETLDGKLIAVEKSLLKQISMPFQQGLCQKFSQPSGTGIEISMLEETGLTKEGDAEFYPLVLKAEARPLNRYENEGNSSSQITLVSFEKRERGEYKVQVMKQVLWVNGKRYELQEIYGIGNVNDGDGHESGGDCVICLSEPRDTTVLPCRHMCMCSGCANLLKVHTANCPICRHPVERLLKIKVNDGYGDQ 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1133 298 Pfam Zinc finger, C3HC4 type (RING finger) 240 285 - -
Aed1g1133 298 PANTHER - 1 297 - -
Aed1g1133 298 SUPERFAMILY RING/U-box 240 285 - -
Aed1g1133 298 SMART ring_2 241 279 IPR001841 -
Aed1g1133 298 PANTHER MAHOGUNIN 1 297 IPR045194 GO:0061630
Aed1g1133 298 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 240 280 IPR045195 -
Aed1g1133 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 228 290 IPR013083 -
Aed1g1133 298 ProSiteProfiles Zinc finger RING-type profile. 241 280 IPR001841 -
Aed1g1133 298 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1133 Aed-Chr1 11100892 11108443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1133 54 260 C3H Transcription Factor Family AT3G09770 55.046 8.12e-76 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1133 - - gmx:100816136 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1133 1 11100892 11108443 Aed1g1133 1 11100892 11108443 ECH