Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1132 ATGAGTGCTCAGCAAAAAGAAAAACATAACGCACCAACGGTTTCTCATCCACTTCACAAGGTGGATGATCCAATGGGGGTAACCGATGAAAATGAAGCCTTGCGTGTTAGTAGCAATCAACGGAAGCGACAGAATCTGCAGCTGGAAATACCGGGCAGAACATCAGAAGAGTGTTGTCAGGATTTTGTTGCAATAAGGATGCCACTCACGCCAAGTCCAACTCCTTGTCAGAAGAGAGTGAATTTTCTTGCGACTTCTCGCTCTGTTGATGCTCCAAGGCCAAGGGCCAAATCGTCGACCATGAGAAACATCTTACCCAAATTCGGCTTCAGGAATCATGTTGAAAAGGGTGCTGCGGCTCCAGAAGGTTCCTTTTCTGGCCATCAGCATCAAGACAAGTCTTCAATCCCAAGATCAGTGTCTCTCACCAAGTTATTCACTCCTAAGATTAACAGAACGTCTTCATTACCGGTTGAAGAAATTGGCCGTGCAAACGTTGATTCTTTTCTCTGTGGGACTCTTGCTGCTTCTCCATGTGGAAGAGAGACCCAGGGGATGATAGCTCGTTCTCGTTCAGTGCCTGTTAACACCAAAGAAAAAGCCATTAGGAGAATGGATTCGGTTTTCCGCATGTTTCCTTCCACTCCTCGCATAAATGAAGTCAATCAAACAACAAAGGATACTGGCTCAGAAAATGGTGAAGATATTGCTGAAGAGGAAGCCGTGTGTAGAATTTGTCTGGTTGAACTATGTGAAGGAGGAGAGACATTAAAGATGGAATGCAGCTGCAAGGGTGAACTAGCTCTGGCTCACCAAGAATGTGCTGTTAAATGGTTTAGTATAAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAGGTTCGGAACCTCCCTGTCACTCTCTTACGGATCCGAAGTGAACTCCCAGTGCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTCCTTGAGCAGCTGCTGGTTGGAAGAATGGCAACCAAGGCAATTTTCATCTCTCTTCCGTTTGCCTGTGTACTGGGTCTACTTTCCTCCATAACATCATCAACCATGGTGAAGAGCAGGTTCATCTGGATTTATGCATCTGTCCAATTTCTTTTGGTGGTTATATTCGCCCACATATTTTACCGCTTGGTTGGTAAGCATGCGGTTTTGTCAATCCTTCTTGCAACATTTGCTGGGTTTGGTGTGGTGATGAGTGGAAGTTCAATGGTTTTGGAGTGTTCTAGATGGAGAAGAAGATGGCAACAGCAGCAGCAGCGTGGTTCTTCAGAAGGGCTATCAAATCAGAGCTGA 1314 0.4551 MSAQQKEKHNAPTVSHPLHKVDDPMGVTDENEALRVSSNQRKRQNLQLEIPGRTSEECCQDFVAIRMPLTPSPTPCQKRVNFLATSRSVDAPRPRAKSSTMRNILPKFGFRNHVEKGAAAPEGSFSGHQHQDKSSIPRSVSLTKLFTPKINRTSSLPVEEIGRANVDSFLCGTLAASPCGRETQGMIARSRSVPVNTKEKAIRRMDSVFRMFPSTPRINEVNQTTKDTGSENGEDIAEEEAVCRICLVELCEGGETLKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKEEVRNLPVTLLRIRSELPVLVIVSMLAYFCFLEQLLVGRMATKAIFISLPFACVLGLLSSITSSTMVKSRFIWIYASVQFLLVVIFAHIFYRLVGKHAVLSILLATFAGFGVVMSGSSMVLECSRWRRRWQQQQQRGSSEGLSNQS 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1132 437 Pfam RING-variant domain 243 290 IPR011016 GO:0008270
Aed1g1132 437 PANTHER OS02G0165000 PROTEIN 26 427 - -
Aed1g1132 437 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 26 427 - -
Aed1g1132 437 SUPERFAMILY RING/U-box 239 294 - -
Aed1g1132 437 ProSiteProfiles Zinc finger RING-CH-type profile. 235 297 IPR011016 GO:0008270
Aed1g1132 437 MobiDBLite consensus disorder prediction 12 29 - -
Aed1g1132 437 CDD RING_CH-C4HC3_MARCH 243 291 - -
Aed1g1132 437 MobiDBLite consensus disorder prediction 1 44 - -
Aed1g1132 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 298 IPR013083 -
Aed1g1132 437 SMART ringv_2 242 291 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1132 Aed-Chr1 11091950 11095711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1132 240 297 C3H Transcription Factor Family AT2G37950 47.458 5.88e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1132 - - gmx:100815599 676.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1132 1 11091950 11095711 Aed1g1132 1 11091950 11095711 ECH
Aed1g1132 1 11091950 11095711 Aed5g0517 5 3728366 3732996 PCT