Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1125 ATGGCGAAAGACGTTGAGCAGGTTCCGGAGCAGCAGGGTGGTGAATACTCTGCAAAGGACTACCACGACCCTCCTCCGGCGCCTTTGTTTGACCCCGAAGAGCTGACAAAGTGGTCCTTGTACAGAGCCGCCATAGCCGAGTTCATAGCTACCTTACTCTTCCTTTACATCACCGTCTTGACCATCATTGGCTACAAGAGACAGAGCGACACCACTATTCAGGGTAACACCGAATGTGACGGGGTCGGTATTTTGGGCATCGCTTGGGCCTTCGGTGGCATGATCTTCGTCCTCGTTTACTGCACCGCCGGCATCTCTGGGGGACACATAAACCCTGCGGTGACATTCGGGTTGTTCCTTGGACGGAAGGTGTCGTTGGTTCGGGCGTTGTTGTACATAATAGCACAGTGCGCGGGTGCAATAAGCGGCGCTGGGTTGGCGAAAGGGTTCCAGAAATCGTACTACAATAGGTATGGGGGTGGGGTTAACCTTGTGAGCTCTGGCTACAATAAAGGTACCGCCTTGGGTGCTGAGATCATTGGCACCTTCGTTCTTGTCTACACCGTTTTCTCCGCCACTGATCCTAAGAGGAACGCTAGGGACTCTCATGTTCCTGTCCTAGCACCACTTCCCATTGGCTTTGCCGTTTTCATGGTTCACTTGGCCACCATTCCTGTCACCGGAACCGGCATTAACCCCGCTAGGAGTTTCGGTCCAGCTGTCATCTTCAACAACGACAAAGCCTGGGACGACCAATGGATTTACTGGGTTGGACCTTTTGTTGGAGCTGCCGTGGCTGCATTCTACCATCAATTCATTCTTAGGGCCGCAGCAATCAAAGCTCTTGGATCCTTCAGGAGCAATGCTTAA 870 0.5276 MAKDVEQVPEQQGGEYSAKDYHDPPPAPLFDPEELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSDTTIQGNTECDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYIIAQCAGAISGAGLAKGFQKSYYNRYGGGVNLVSSGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFVGAAVAAFYHQFILRAAAIKALGSFRSNA 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1125 289 MobiDBLite consensus disorder prediction 1 25 - -
Aed1g1125 289 PANTHER AQUAPORIN PIP2-7 1 289 - -
Aed1g1125 289 Pfam Major intrinsic protein 34 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed1g1125 289 ProSitePatterns MIP family signature. 109 117 IPR022357 -
Aed1g1125 289 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 289 IPR034294 -
Aed1g1125 289 PRINTS Major intrinsic protein family signature 177 195 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed1g1125 289 PRINTS Major intrinsic protein family signature 213 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed1g1125 289 PRINTS Major intrinsic protein family signature 253 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed1g1125 289 PRINTS Major intrinsic protein family signature 128 147 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed1g1125 289 PRINTS Major intrinsic protein family signature 91 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed1g1125 289 PRINTS Major intrinsic protein family signature 42 61 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed1g1125 289 Gene3D Glycerol uptake facilitator protein. 27 289 IPR023271 -
Aed1g1125 289 TIGRFAM MIP: MIP family channel proteins 46 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed1g1125 289 SUPERFAMILY Aquaporin-like 33 275 IPR023271 -
Aed1g1125 289 CDD MIP 42 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1125 Aed-Chr1 11063274 11064664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1125 1 287 Major Intrinsic Protein MIP AT5G60660 78.746 9.51e-167 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1125 K09872 - gmx:732604 545.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1125 1 11063274 11064664 Aed1g1125 1 11063274 11064664 ECH
Aed1g1125 1 11063274 11064664 Aed5g0525 5 3772803 3774919 ECH
Aed2g1846 2 23172681 23174734 Aed1g1125 1 11063274 11064664 ECH
Aed1g1125 1 11063274 11064664 Aed5g0525 5 3772803 3774919 PCT