Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1121 ATGAAGGAAACTGAGAAAAGTTTGGATCCGCAGCTGTGGCACGCCTGCGCCGGCGGCATGGTTCAGATGCCGCCGGTGAACTCCAAGGTGTTTTATTTTCCTCAGGGACACGCGGAACACGCGCAGTCCAACGTTGATTTCGGAGCCTCGAGGATTCCGATTCCGCCACTCATTCTGTGCCGCGTGGCAGCTGTCAAATTCTTGGCCGACCCCGAAACGGATGAGGTCTTCGCCAGATTGAGGTTGGTTCCTCTCAGAAACTCGGAGCCTGACTACGAAGATAGCGACGGAGTTGACGGTAACGGCGCGGAGGGTTCGGAGAAGCCAGCGTCGTTCGCGAAGACGTTAACTCAGTCCGATGCGAATAATGGTGGCGGGTTCTCGGTTCCGAGATACTGCGCGGAGACGATATTTCCGCGGCTGGATTACTCGGCGGAGCCGCCGGTGCAGACGGTGATCGCCAAGGACGTGCACGGGGAGGTGTGGAAGTTCCGGCACATATATCGAGGGACGCCACGTCGGCACTTGCTGACAACCGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTGGTGGCGGGGGATTCTATCGTGTTTTTGCGGGCCGAGAATGGGGATCTTTGCGTGGGGATTCGTAGGGCCAAGAGAGGGGGGGTTGGTGGGCCAGAGGGGCCGTGCAGTGGGTGGAGTTCTGGTGGGCTTGGGCCTTATGGGGCGGCCTTTTCGGCTTTTTTGAGGGAGGAGAGTAAGGTGTGTGGGAGGCCGAAGGTGAGTGGTGAGTCAGTTAGGGAGGCTGTTACTTTGGCGGCTAGTAATGAACCCTTTGAGGTTGTTTACTACCCTCGAGCGAATACTCCAGAGTTTTGTATTAGGACTTCAGCTGTCAGAGGGGCTATGAGGATTCAGTGGTGTTCTGGGATGCGGTTTAAGATGCCCTTTGAGACTGAGGACTCTTCCAGGATTAGCTGGTTCATGGGAACTATTGCTTCTGTTCAGCTTCTTGATCCTATTCGTTGGCCTAATTCACCTTGGAGGCTTCTTCAGGTTAGTTGGGATGAGCCAGATTTGCTACATAATGTGAAGCGTGTAAGCCCATGGCTGGTTGAGTTGGTATCGAACGTGCCAATGATCCATCTGGCACCCTTCTCTCCACCAAGGAAGAAGCTTAGGTTTCCACAACACCCAGAGTTTCCCCTTGACGTTGTTCAATTTCCGATACCAACGTTTTCAGGCAACCCCTTTGGGTCCAGCACTAGCAACCCCTTGTGTTGTCTAAGTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTATCAGATCTCCACCTTAACAATAATAATAATAAGCTGCAGTTGGGGTTACTTCCGCCGGCTAATGTCCACCAGCTTAATTTGCACACTAATGGCGGCAACATCAACAACCATGGTAATGGTAATAATAAGAGTAAAGAAAGTCTATCATGCTTGCTCACCATGGGAATTTCAAACAAGAAGAACACTTTGGAGAAATCTGATCATGTCAAGAGACACCAATTTTTGCTTTTCGGTCAACCGATACTCACTGAGCAACAAATTTCTAGATCTTCTAGTGATGTGTTGTCTCAAAACGATGAGAATAATAATAATAAGGAGAAGAAGGAAAAGGGATTTCTCAGTGATTCCCATTCTTCAGTCTCACCAGGAAAGTCTTCTTCCACAGCAGAGTTCTCTTGGCAACTCGGTTCGGATACCAGCCATTGCAAGGTTTTCTTGGAGTCAGAAGATGTGGGACGGACCCTTGACTTGTCTTGTCTTGGTTCTTATGAAGAGTTGTACATGAGACTGGCTAACATGTTTGGAATAGAAAGGTCTGAGATGTTGGGTCATGTTCTCTACCGCGACGCAACCGGTGCTCTTAAGCAAACTGGAGAAGAACCATTCAGTGAGTTCATGAAGACAGCAAAAAGATTGACAATTCTGACGGATTCAAACAGCAAAGACAGTAGAAGGGTTTGGATCACAGGAACTCGAAATATTGAACATGGATTGGATGCTGCATCAAATAAGACAGGTCCTATGAGTATATTTGCTTAA 2091 0.494 MKETEKSLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQSNVDFGASRIPIPPLILCRVAAVKFLADPETDEVFARLRLVPLRNSEPDYEDSDGVDGNGAEGSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGGVGGPEGPCSGWSSGGLGPYGAAFSAFLREESKVCGRPKVSGESVREAVTLAASNEPFEVVYYPRANTPEFCIRTSAVRGAMRIQWCSGMRFKMPFETEDSSRISWFMGTIASVQLLDPIRWPNSPWRLLQVSWDEPDLLHNVKRVSPWLVELVSNVPMIHLAPFSPPRKKLRFPQHPEFPLDVVQFPIPTFSGNPFGSSTSNPLCCLSDNAPAGIQGARHAQIGISLSDLHLNNNNNKLQLGLLPPANVHQLNLHTNGGNINNHGNGNNKSKESLSCLLTMGISNKKNTLEKSDHVKRHQFLLFGQPILTEQQISRSSSDVLSQNDENNNNKEKKEKGFLSDSHSSVSPGKSSSTAEFSWQLGSDTSHCKVFLESEDVGRTLDLSCLGSYEELYMRLANMFGIERSEMLGHVLYRDATGALKQTGEEPFSEFMKTAKRLTILTDSNSKDSRRVWITGTRNIEHGLDAASNKTGPMSIFA 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1121 696 MobiDBLite consensus disorder prediction 89 108 - -
Aed1g1121 696 ProSiteProfiles PB1 domain profile. 583 663 IPR000270 GO:0005515
Aed1g1121 696 Pfam Auxin response factor 264 347 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aed1g1121 696 Gene3D - 110 214 IPR015300 -
Aed1g1121 696 Gene3D - 580 667 - -
Aed1g1121 696 Gene3D - 302 375 - -
Aed1g1121 696 SMART B3_2 112 214 IPR003340 GO:0003677
Aed1g1121 696 SUPERFAMILY DNA-binding pseudobarrel domain 107 213 IPR015300 -
Aed1g1121 696 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Aed1g1121 696 CDD B3_DNA 111 212 IPR003340 GO:0003677
Aed1g1121 696 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Aed1g1121 696 PANTHER AUXIN RESPONSE FACTOR 2 672 - -
Aed1g1121 696 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 672 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aed1g1121 696 MobiDBLite consensus disorder prediction 544 558 - -
Aed1g1121 696 MobiDBLite consensus disorder prediction 532 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1121 Aed-Chr1 11017659 11020658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1121 4 665 B3 DNA Binding Superfamily AT4G30080 59.178 0.0 764
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aed1g1121 B3 4.4e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1121 - - gmx:100778135 1208.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1121 1 11017659 11020658 Aed1g1121 1 11017659 11020658 ECH
Aed1g1121 1 11017659 11020658 Aed5g0533 5 3845334 3848632 ECH
Aed8g0406 8 3361313 3367049 Aed1g1121 1 11017659 11020658 ECH
Aed2g1849 2 23200831 23204436 Aed1g1121 1 11017659 11020658 ECH
Aed1g1121 1 11017659 11020658 Aed5g0533 5 3845334 3848632 PCT