Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1120 ATGTACTGTAGTGTTTTGGAACAGGATATTGCTAATAATATGAAGGACTCTTGGTTTTTCGACAATAACTTCAATGGTCTGTCAGATGATATTTTTGATGATGTCATCAACTTTTTTGATTTCCCGCTGGAAGACATTGATGCCAATGGTGAAGAAGACTGGGATGCTCAATTAAAATGCCCTGAAGACCAACGTTTTGATGTTTATACAGAATCACCAGCTGAGCTGTGTGGCAAAACTCAAAATGAAAAAAAGCCCCAACTTGGAATGGAGTTCTCTGCTTCTTTGGAAGTTTCAAGGGTTGCACGACCAAGGGAAGAGAAAGGTAGGAAGCTTGATGCTAACCTCTTTCCTCTCCCATTCAGGTTGCAGAAACTTCCTCCCTTGAGAAACGGGATTTCCCCAATAAAACGGCTGGCAAAGGCTTCTGGACCAGCAGCATATGGAAAAACCATTCCCCACCAGAATGTCAATTCCAATGGAAAAGATTTGCATCAATTCCAAACCTACACCTACAGCCCAGTTTCGGTTTTTGAAAGCAGCAGTTCTTCCTCTGTTGAGAATTCCAACTTTGATCGACCTGTCATCCCAGTAAAGCGTGCTCGAAGTAAACGTCAGCGTCTTTCAAGCTTCAGTCCTCTATTTTCAATTCCTTTCATCATTAATTCACCGGCTTTACAAAAACATCAAAGGACAGCTTCCTCTGAATCAGATTTTGGAACAAATGTTGCTGGGAATCTGTCAAACAACGTTAAAAATCAGAGGAAAAAGGATTTGTCCCTGCTATCAGATGATGTTGAGAAGATGAGATCCTCATCACTGGAGTCAGGTCCCCCCAGAAAATGCATGCATTGTGAGGTGACAAAAACCCCACAATGGAGAGAGGGACCTATGGGTCCCAAAACACTGTGCAATGCTTGTGGTGTTCGATACAGGTCCGGCCGCCTCTTTCCCGAATACCGGCCGGCAGCTAGCCCGACTTTTGTAGCATCACTGCACTCAAACTGTCACAAGAAGGTTGTGGAGATGAGAAGCGGAGGCATCCAGGAGGAGGCTGTTAGGGGTTCTATGTTGGCTTCATCAAATCTCCATGGAAATTCTGTAGGATAA 1110 0.4396 MYCSVLEQDIANNMKDSWFFDNNFNGLSDDIFDDVINFFDFPLEDIDANGEEDWDAQLKCPEDQRFDVYTESPAELCGKTQNEKKPQLGMEFSASLEVSRVARPREEKGRKLDANLFPLPFRLQKLPPLRNGISPIKRLAKASGPAAYGKTIPHQNVNSNGKDLHQFQTYTYSPVSVFESSSSSSVENSNFDRPVIPVKRARSKRQRLSSFSPLFSIPFIINSPALQKHQRTASSESDFGTNVAGNLSNNVKNQRKKDLSLLSDDVEKMRSSSLESGPPRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNCHKKVVEMRSGGIQEEAVRGSMLASSNLHGNSVG 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1120 369 SMART GATA_3 276 326 IPR000679 GO:0006355|GO:0043565
Aed1g1120 369 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 275 337 - -
Aed1g1120 369 CDD ZnF_GATA 281 328 IPR000679 GO:0006355|GO:0043565
Aed1g1120 369 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 32 345 - -
Aed1g1120 369 Pfam GATA zinc finger 282 315 IPR000679 GO:0006355|GO:0043565
Aed1g1120 369 ProSitePatterns GATA-type zinc finger domain. 282 307 IPR000679 GO:0006355|GO:0043565
Aed1g1120 369 PANTHER GATA TRANSCRIPTION FACTOR 32 345 - -
Aed1g1120 369 Gene3D - 274 351 IPR013088 GO:0006355|GO:0008270
Aed1g1120 369 ProSiteProfiles GATA-type zinc finger domain profile. 276 312 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1120 Aed-Chr1 11006787 11010795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1120 21 344 C2C2-Gata Transcription Factor Family AT1G08010 35.866 6.40e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed1g1120 GATA 4.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1120 - - gmx:100813303 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1120 1 11006787 11010795 Aed1g1120 1 11006787 11010795 ECH
Aed1g1120 1 11006787 11010795 Aed5g0534 5 3869640 3873543 PCT