Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1115 TTTGAAGATGATCCGGAGATAGCAAAAAAATTTCCTGCAACAGACGGTGACAAAGGTTTTAAGATTAAATTCCACATTGATGGCACACAAATACCCGAGCCTAGTTCCAATAAGGCTCAGAAAAAGGTGACAGGGAAGTTCTTGAAAGCTAGAATGTTGTCAAGAAAGTTAACATTATACAACCTAATTTCTTTATTTATGGGTAAAAAGATTTTAGGGGCTTGCTGGTACCTTCTATCAATCGAACGTCAAGAAGCATGCTGGAGAAGTGTATGCGATTTGGAGAAGTCATATTGTGAATATGGATTCTTTGACTGCCACAGGGTTAAGGATGCCATCAGGGTCTCCTGGTTTATGGCAAGTAATATCACAAATTTATGCTCACCAAATGCAATTGCAAACCATCATGATGACTTGTATCAGTTTGGTATATACGCTGATGCCGTCACTGCCAAAGTTACATCCTCGCCTTTCTTTAATAAGTACTTCTTTTGCCTCTGGTGGGGCCTAAGGAATCTGAGTTCTTTGGGACAAGGCCTTCTTACTAGCACATATGTTGGAGAAATAATGGTCGCCATTGTTATTGCAACCCTTGGATTGGTTCTTTTTGCGTTGCTAATTGGTAACATGCAGACATATCTCCAATCAACGACTGTTCGGTTAGAAGAGTGGAGGGTGAAAAGAACTGATACAGAACAATGGATGCATCACAGGCAACTCCCTCCAGAACTAAGAGAATCTGTGCGTAAATATGACCAATACAAATGGCTCGCTACACGAGGTGTAGATGAAGAAGCTCTTCTCAATGGACTTCCCGTCGATCTCCGGAGAGAAATCAAGCGCCACCTCTGTCTCGATTTAGTTCGAGGAGTGCCATTATTTGACCAAATGGACGAGAGAATGCTGGACGCAATATGCGAAAGGCTAAAGCCTGCATTGTGCACAGAGGGCACGTTTCTTGTCCGCGAGGGTGACCCTGTCAATGAAATGCTCTTCATAATCCGAGGCCATCTCGATTCTTACACCACTAACGGGGGCCGGGCCGGTTTCTTCAACTCGTGCCGTATTGGGCCGGGAGATTTCTGCGGCGAGGAGCTTCTAACTTGGGCCTTGGATCCGAGGCCCAGTGTCATACTCCCTTCTTCCACTCGAACAGTGAAAGCCATCTCAGAAGTGGAGGCCTTTGCACTCATAGCCGAAGACCTTAAATTCGTTGCATCACAGTTTAGAAGACTACACAGCAAACAACTCAGACATAGATTCAGGTTTTACTCGCACCAGTGGAGAACTTGGGCTGCGTGTTTCATTCAAGCCGCGTGGAGAAGGTATAAGAAAAGAAAGGAAGTTGCTGAACTAAGGGCTAGGGCAACTGCTGAGCCTGAAACAGTAGCATTGGCAAGGAGTACTAGAAAAGGTGTAGGTGTCAATATTATTAATATCCATTCTCGGATAGATTCTGATTCTGGAGTTGTAAGCTCTTTGCAGAAGCCACCGGAACCTGACTTCTCTGTTGATGAATGA 1521 0.4451 FEDDPEIAKKFPATDGDKGFKIKFHIDGTQIPEPSSNKAQKKVTGKFLKARMLSRKLTLYNLISLFMGKKILGACWYLLSIERQEACWRSVCDLEKSYCEYGFFDCHRVKDAIRVSWFMASNITNLCSPNAIANHHDDLYQFGIYADAVTAKVTSSPFFNKYFFCLWWGLRNLSSLGQGLLTSTYVGEIMVAIVIATLGLVLFALLIGNMQTYLQSTTVRLEEWRVKRTDTEQWMHHRQLPPELRESVRKYDQYKWLATRGVDEEALLNGLPVDLRREIKRHLCLDLVRGVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRAGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHRFRFYSHQWRTWAACFIQAAWRRYKKRKEVAELRARATAEPETVALARSTRKGVGVNIINIHSRIDSDSGVVSSLQKPPEPDFSVDE 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1115 506 PANTHER PROTEIN CNGC15A 58 504 - -
Aed1g1115 506 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 58 504 - -
Aed1g1115 506 Gene3D Helix hairpin bin 220 284 - -
Aed1g1115 506 ProSiteProfiles IQ motif profile. 429 458 IPR000048 GO:0005515
Aed1g1115 506 ProSiteProfiles cAMP/cGMP binding motif profile. 293 390 IPR000595 -
Aed1g1115 506 SUPERFAMILY Voltage-gated potassium channels 56 256 - -
Aed1g1115 506 CDD CAP_ED 293 424 IPR000595 -
Aed1g1115 506 Pfam Ion transport protein 71 220 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Aed1g1115 506 Gene3D Jelly Rolls 291 411 IPR014710 -
Aed1g1115 506 SMART cnmp_10 293 424 IPR000595 -
Aed1g1115 506 SUPERFAMILY cAMP-binding domain-like 223 418 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1115 Aed-Chr1 10963052 10965755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1115 60 505 Ion Channels AT2G28260 74.444 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1115 K05391 - gmx:100811847 789.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1115 1 10963052 10965755 Aed1g1115 1 10963052 10965755 ECH
Aed1g1115 1 10963052 10965755 Aed5g0538 5 3902961 3903914 PCT