Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1113 ATGAAGCCTCAACTCAATGTTGCTGTTGCTCTTGTTATTAGCTTACTCAGTATTCAGCACTCATTTTGTGATGAACCTTCTGATACTGGACTAAACAAGTGGAAATGTAGATGCTCTTCATTACAAGGGAATCAGAAACACACTCTTGCTAATTGTTCCAAGTCATGTGATTGCCATTCAGATGCTGAAGAGAATGCGTCCACATGGACATGCCAATGTGATCCAAACGGGTTTCCTAAAGTGACAGCAGATGACCATAACCTTAGTTGTTTTAATGCCTGCAATTGCACCTGGGGAACTGTCAGGAAGCCACTAGGTTCAAAGAAACAAAATTCGAGCAAGACTGTAGTAATTATTCTATCGATATGTGTTATATGCACAACTATTGCTTTTCTTACCTCAGTTGCATGTCATGTCTGCCGAAGGGACAAATATCCTATCCAATCACCAATGATCTCATCAGATAAAGAAACAAGTTACTGTAGTACCACCAACTTGATTAGTCATAGGACTTCTTCGTGGCCAGAAACAAAAGTTGCTATAAATTCTCCTATTAGTCATATTACAAGATGCTTTCAGAAAGCCTCTTTGTTGTTTGGGAGCCAAAGAGAAACCTTTCATGGAAATATTATTCAATTTTCGTTTTCTGAACTGGAAAATGCCACTGAAAACTTCTCAACTTCCAACCTAATTGGATTAGGTGGAAGTAGTTACGTATACCGTGGTCGGTTGAAAGATGGTAGTATTGCGGCAGTCAAAAGACTAAAAGATCAAAGAGGGCCTGAGGCAGACTGTGAATTTTATACAGAGACTTCACCATTGTCATCTGGTGCCATTGGTGGGATACTGCTCGGAATTAAAAGGAAAAAATGTTCAAAGATAACTGATCTGGGTATGGCTAAAAACTTGAGAGCTGATGACCACCCTAGTTGTTCAGATTCTCCAGCAAGAATGCAAGGAACATTTGGTTATTTTGCACCTGAGTATGCAATTATTGGGAGAGCTTCTCTCGAGTCAGATGTCTTCAGTTTTGGAGTGGTTCTTCTTGAGCTTATCAGTGGTCGCCAACCCATCCATAAATCCGCAGGCAAAGAAGAAAGCCTTGTTATTTGGGCAACTCCACGCTTAGAGGATAGTAGGCGAGTACTAACAGAGTTGGCTGATCCACAATTGAAAGGAAACTTCCCAGAAGAAGAGGTGCAGATAATGGCATACTTAGCACAGGAATGCTTGCTGTTGGATCCTGAAACTCGACCAACTATGAGTGAAGTTGTTCAAATTCTTTCAAGTATTTCCCCGGGAAAATCTAGAAGGAGAAGAAACATTTCAGTGAGCCTTTTTCAGGAACCAGAGGACTTAGAGAAGCAAAGACCAGCTCCATCAAGTAGATTTCCATCTCATAATCTTCATGTTGGGAACGAAAATATAGATGTACATACAGTTTCAACTGAGCATATGGATAGTTTGATCCTCTTTACTTCAAAAGGTGGGAGCTGGCACGCATCAGAAGAGGAAATGGTAGATTTAACTGAGCCTCGTTTTGAATCATTTTTCATGACAAACGACAATTTCCCTTGA 1578 0.4043 MKPQLNVAVALVISLLSIQHSFCDEPSDTGLNKWKCRCSSLQGNQKHTLANCSKSCDCHSDAEENASTWTCQCDPNGFPKVTADDHNLSCFNACNCTWGTVRKPLGSKKQNSSKTVVIILSICVICTTIAFLTSVACHVCRRDKYPIQSPMISSDKETSYCSTTNLISHRTSSWPETKVAINSPISHITRCFQKASLLFGSQRETFHGNIIQFSFSELENATENFSTSNLIGLGGSSYVYRGRLKDGSIAAVKRLKDQRGPEADCEFYTETSPLSSGAIGGILLGIKRKKCSKITDLGMAKNLRADDHPSCSDSPARMQGTFGYFAPEYAIIGRASLESDVFSFGVVLLELISGRQPIHKSAGKEESLVIWATPRLEDSRRVLTELADPQLKGNFPEEEVQIMAYLAQECLLLDPETRPTMSEVVQILSSISPGKSRRRRNISVSLFQEPEDLEKQRPAPSSRFPSHNLHVGNENIDVHTVSTEHMDSLILFTSKGGSWHASEEEMVDLTEPRFESFFMTNDNFP 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1113 525 Gene3D Phosphorylase Kinase; domain 1 199 278 - -
Aed1g1113 525 ProSiteProfiles Protein kinase domain profile. 99 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1113 525 PANTHER OS01G0253100 PROTEIN 291 519 IPR045271 GO:0004714|GO:0006468
Aed1g1113 525 Gene3D Transferase(Phosphotransferase) domain 1 281 448 - -
Aed1g1113 525 SUPERFAMILY Protein kinase-like (PK-like) 215 433 IPR011009 -
Aed1g1113 525 PANTHER OS01G0253100 PROTEIN 2 271 IPR045271 GO:0004714|GO:0006468
Aed1g1113 525 PANTHER RECEPTOR-LIKE SERINE/THREONINE-KINASE NCRK PROTEIN 2 271 - -
Aed1g1113 525 PANTHER RECEPTOR-LIKE SERINE/THREONINE-KINASE NCRK PROTEIN 291 519 - -
Aed1g1113 525 Pfam Protein kinase domain 288 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed1g1113 525 ProSitePatterns Protein kinases ATP-binding region signature. 231 253 IPR017441 GO:0005524
Aed1g1113 525 MobiDBLite consensus disorder prediction 450 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1113 Aed-Chr1 10956066 10960559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1113 292 521 Receptor kinase-like Gene Family AT2G28250 57.082 6.08e-70 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Aed1g1113 Pkinase 1.2e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1113 - - zju:107411378 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1113 1 10956066 10960559 Aed1g1113 1 10956066 10960559 ECH
Aed1g1113 1 10956066 10960559 Aed5g0542 5 3939968 3945676 ECH
Aed1g1113 1 10956066 10960559 Aed5g0541 5 3931030 3936884 PCT