Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1107 ATGTCTCTGCGTCGTTTTCCCGCTTCACACAACCTAGTCCTTGTTTCTTACCTCCTTCTTCTTGTTTCAAGGTGCCTCCTCCGCTGTAGCTCAACACAGCTTTATCTTGTTTTAAAAACGAGGGTTGTTTTTGTTGTTGTAGTGCTAATTGTGTGGTTCTCGTTCAGTGTTTTCTGTGACCGACAGAGAGATTTAGATATTGCGCTGTTTGGTGGGTGGAAAAGCATCATGTTGGAGCTGAGAGCAATATGGACTTGGGGGTTAATGCAGTGGTTATGCACTTCTGAAAGTTTAAGGCCTGAATCTCATGTAGCACAGCAAATTCGGCGTGAAAAACTGAGAATCCAGAACAGTTCTCAGCCTTTACACGAATTCCCTAACAACAATCCTGGACAGTTCAATAACCTTGACCTTCTTCAAGTTAGGAATGTTAGAAATGCTAACATGCTTGATGAACTAGCTGTTTATTCATCAGAAATGCCAAACTTTTCTACCTCTTCGAACCCTATGTCTGCTCCAAGGAACGCGTTGGAGTATCAGGAAGTGCAAGGTGCTGCTGCTGCTGAACCGAGTAATAATAGGCTGATGATGAATCAGTATGGCTCATTTCCCCATTCCTCGTCAGCAATTCATTCTTCCCATAAAGAACAGTGTGAGCTTCGTAATTTGGGAAATTGGAGGAACAGTGCTCCGGCCCATCAGGGATCTGATTGGTTTGTTACTTATGCAAACAATGCCAATTCTGTTTTGTCTGCTGAGCTCAACAATGTGTCTGCTAATGCTTACAATGAACTTATTGATGTACAGTGTAGCAATGCTTCATCAGGTAGAGAATTTCAAAAGCAATTAGGTGTACTACAGCATAATCCTCCACTTTATCACAATGCTTTGCAAGATATTGTGAAGTCAGCTTCTATCAGTGCCCACACTAGCAGGCAAGACATGGCTTCACTGATGCAACAAAATAACAACATTTGGGTGGGGAATGCTACTCATCATGAAGTTGAGCTACAACAACAAAGTTATGAAAATCAGCTAAATCCGTTGCGTTTTGGGTGGACAAATCGAGCAATTGCTAATAGTACCCTGAGTGATTCAACTCCTTCCCAGAGCTTATCCTTGTCACTATCATCAAATACACAACAACCCAAGGCTTCTGTTTCTCAGCATGAACAAGGGTCTGCATCTGAAGTTTCTAGAGATTGTGGAAAATCACCTCAAGAGACAGTGGGATTAATGCCTTCAAAGAGCACTAGTATTAGTTATCGAAGTGTGGGTCCCCTTGGCCCTTTCACTGGGTATGCTACTATTCTTAAGAGTTCAAGGTTCTTAAAGTCTGCCCAACAATTGCTAGATGAGATTTGCTGTCTATCTGCTGCAAAATTTGCGAAACAATATGATGTTTCAAAGAGGGTTTCTCAAGAAGGTAGTGCTTCTACTTCTGCTGATACTGCTACCGGGGTTGCTGCAGCTGCAAAAGGTAGTGACTTAGGTTCTTCATCATCTATGTTGTATAATGTTTCAAAAGAAAATAATAGGGCTGATCCGGGAGTTGGAAGTAGCTTTGGCCTTTCCTCGCGGCGGCCAGATTATCAACATAAGAAAGCAAAGCTATTGTACATGCAAGAGGAGGTTACGAGGCAATGCAAGCAGTACCATCTACAAATGCAAATGGTTCTTGCATCGTTCGAGTCAGTAGCGGGTCTTGGATCTGCTACTCCTTACATACCCATGGCTATGAACTCAGTATCAAAACACTTCAGGTGTTTAAAAAATTCGATCTCAGATGAGCTGAAGCTTATAAGTGAGGCCTTGGGAGAGGCTTATTTGTCAATACCCTCAAGCAGTAGTTGTAGTAAAGCTGACACTACAAATACAATGGCAAGGATAAGATCATGCAGTGGCATGGACCAAAGCTTTCTAAGGAACAAATTATCTGTCACTGGCACTGCTACCACGGAACTTCTTGAAATCCAACACCAACAGCAGCATGTGTGGAGGCCCCAGAGAGGGTTGCCAGAGCGTGCAGTGGCAATTCTTAAAGCCTGGTTATTTGAGCATTTTCTTCATCCTTACCCTACAGACGCTGATAAACACTTCTTGGCTAGTCAAACAGGTCTTTCGCGAAACCAGGTATCAAATTGGTTTATAAATGCTCGAGTCCGAGTGTGGAAGCCAATGGTTGAGGAAATACACACGCTTGAAACAAAAGCAACAGGCTCCAAGGGCAATTGTGTGGGAACTTCTTCTGGCGCAGGAGGTGATACCAGACAGCTGCCTAGAGCATTGAGCAATATTGGTATGAATTCCATACCTGAAAACCAATTTGAGGGTATGGATATGGATATGGGAAATGCAGAAGAATGTGAATGGAATAAAGAGAAGAGGTCAAAATTGGAATGCGAAATGAGTTCAAATTCAAATATGGATGGAACAATGATGGGTTTTGTGCCATACCGACGTGGCGGCCTAGGGTCGACTGTGTCACTAACGTTGGGTCTTAGGCATGGCGTTGAAGGTGTACAAGTACAACAACAATTGCAAGAGGAGCACCTTGGAGTTGGAGGGCACATGATTCATGACTTTGTGATGGGAAATTGA 2601 0.4306 MSLRRFPASHNLVLVSYLLLLVSRCLLRCSSTQLYLVLKTRVVFVVVVLIVWFSFSVFCDRQRDLDIALFGGWKSIMLELRAIWTWGLMQWLCTSESLRPESHVAQQIRREKLRIQNSSQPLHEFPNNNPGQFNNLDLLQVRNVRNANMLDELAVYSSEMPNFSTSSNPMSAPRNALEYQEVQGAAAAEPSNNRLMMNQYGSFPHSSSAIHSSHKEQCELRNLGNWRNSAPAHQGSDWFVTYANNANSVLSAELNNVSANAYNELIDVQCSNASSGREFQKQLGVLQHNPPLYHNALQDIVKSASISAHTSRQDMASLMQQNNNIWVGNATHHEVELQQQSYENQLNPLRFGWTNRAIANSTLSDSTPSQSLSLSLSSNTQQPKASVSQHEQGSASEVSRDCGKSPQETVGLMPSKSTSISYRSVGPLGPFTGYATILKSSRFLKSAQQLLDEICCLSAAKFAKQYDVSKRVSQEGSASTSADTATGVAAAAKGSDLGSSSSMLYNVSKENNRADPGVGSSFGLSSRRPDYQHKKAKLLYMQEEVTRQCKQYHLQMQMVLASFESVAGLGSATPYIPMAMNSVSKHFRCLKNSISDELKLISEALGEAYLSIPSSSSCSKADTTNTMARIRSCSGMDQSFLRNKLSVTGTATTELLEIQHQQQHVWRPQRGLPERAVAILKAWLFEHFLHPYPTDADKHFLASQTGLSRNQVSNWFINARVRVWKPMVEEIHTLETKATGSKGNCVGTSSGAGGDTRQLPRALSNIGMNSIPENQFEGMDMDMGNAEECEWNKEKRSKLECEMSSNSNMDGTMMGFVPYRRGGLGSTVSLTLGLRHGVEGVQVQQQLQEEHLGVGGHMIHDFVMGN 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1107 866 SMART prehox3 432 596 IPR006563 -
Aed1g1107 866 MobiDBLite consensus disorder prediction 369 403 - -
Aed1g1107 866 Gene3D - 669 731 - -
Aed1g1107 866 ProSiteProfiles 'Homeobox' domain profile. 663 726 IPR001356 GO:0003677
Aed1g1107 866 MobiDBLite consensus disorder prediction 369 415 - -
Aed1g1107 866 Pfam Associated with HOX 437 595 IPR006563 -
Aed1g1107 866 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 130 838 - -
Aed1g1107 866 CDD homeodomain 666 727 IPR001356 GO:0003677
Aed1g1107 866 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 130 838 - -
Aed1g1107 866 SUPERFAMILY Homeodomain-like 668 732 IPR009057 -
Aed1g1107 866 Pfam Homeobox KN domain 683 722 IPR008422 GO:0003677|GO:0006355
Aed1g1107 866 SMART HOX_1 666 730 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1107 Aed-Chr1 10907433 10913699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1107 415 736 Homeobox Transcription Factor Family AT5G02030 40.994 4.69e-62 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Aed1g1107 POX 7.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1107 - - gmx:100790583 1017.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1107 1 10907433 10913699 Aed1g1107 1 10907433 10913699 ECH
Aed1g1107 1 10907433 10913699 Aed5g0549 5 4002470 4006593 PCT