Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1102 ATGAATGGAGAGAGGGGATACGCCAAAGAGGATCCCTCAAGCAAGGGCAAAAAGGCGGACCGGCACATCAAGGTGAGCGGGAGAGACCGTCGTGTTCGTTTATCACCGGTGTCTGCTGCTCGTATCTTCCAACTCACGCGTGAACTAGGCAAGAAGACTAATGGTGAGACCATTGAGTGGCTCTTACGCCAGGCTGAGCCCTCCATTATCGCCGCCACCAGCACAGGCATTAAGCCTTCCAACAACGCCTCGTCCGTTGTTGCCACCAATTCCACCGATGACTTTTCGCCCTACAACAACACCACCACCTTGGTGCCACCGGACACAGTTGATGCTGATGATGATCATGATCAGGATGATGCCTACTTGATCACGAATGTTGCTGCCGGTGCAAGTGCAACGATAGCGCAGCAGATCCCACCTTTCCATTTCGACTTTGATTGGGTGCAACACTCCGATTTAGGATTTTGA 471 0.5244 MNGERGYAKEDPSSKGKKADRHIKVSGRDRRVRLSPVSAARIFQLTRELGKKTNGETIEWLLRQAEPSIIAATSTGIKPSNNASSVVATNSTDDFSPYNNTTTLVPPDTVDADDDHDQDDAYLITNVAAGASATIAQQIPPFHFDFDWVQHSDLGF 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1102 156 Pfam TCP family transcription factor 18 108 IPR017887 -
Aed1g1102 156 ProSiteProfiles TCP domain profile. 18 72 IPR017887 -
Aed1g1102 156 MobiDBLite consensus disorder prediction 1 30 - -
Aed1g1102 156 MobiDBLite consensus disorder prediction 75 100 - -
Aed1g1102 156 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 9 96 IPR005333 GO:0003700
Aed1g1102 156 PANTHER TRANSCRIPTION FACTOR TCP6 9 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1102 Aed-Chr1 10879594 10880064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1102 9 117 TCP Transcription Factor Family AT5G23280 50.000 1.60e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Aed1g1102 TCP 4.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1102 - K16221 pvu:PHAVU_005G132500g 142.895