Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1096 ATGGTGTCTGACGCGAGCAAGAAGAAGGCTGCGCAAAAGAAGGCGGCGGCAGCGGCCAAGAGAGGAGGCAAAGCCGCCGTCGCCGCAGCAGCTACTTCGTCGAAAGCAGCAGCTGCTTCGGACAAGCTCGCCGACGGAATTGGGGATATTCATATTTCCGATCGGACCTGCACCGGTGTCCTCTGTTCGCATCCTCTTTCCAGAGATATCAGGATAGAATCTCTGTCAGTTACTTTCCACGGACATGATTTGATAGTTGATTCCGAATTGGAGCTAAATTATGGAAGACGTTATGGCTTGCTTGGATTAAATGGTTGTGGAAAATCTACCCTGCTTACGGCAATAGGTTTCCGAGAGCTACCTATTCCAGACCACATGGATATTTATCACCTAACCCGAGAAATTGAAGCCTCTGACATGTCTTCATTGGAGGCTGTCATAAGCTGTGATGAGGAAAGGTTGAGACTGGAGAAAGAAGCTGAAGCTTTGGCAGCTCAGGATGATGGGGGTGGGGAAACTCTTGAACGTATTTATGAACGATTGGAAGCCATGGATGCGTCAACTGCAGAAAAGCGTGCTGCTGAAATTTTATTTGGTCTTGGTTTCAACAAGCAGATGCAAGCAAAGAAGACATGTGATTTTTCTGGTGGCTGGAGAATGAGGATTGCTTTAGCACGTGCTCTATTTATGAAGCCTACCATTCTTTTACTTGATGAACCAACCAATCACCTTGATTTGGAAGCTTGTGTGTGGCTGGAAGAGAATCTGAAGAAGTTTGACCGAATTCTGGTTGTGGTTTCACACTCCCAGGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAAAGCAAGAAGCTGAAGCTCTATACTGGTAATTATGATCAATATGTTCAGACACGTGCTGACCTGGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAGGATCAAATTGCCTCAATGAAGGAATACATTGCCCGATTTGGTCATGGATCAGCAAAACTAGCTCGCCAAGCCCAGAGTAAAGAGAAAACTCTTGCAAAAATGGAAAGGGGTGGACTTGCAGAGAAAGTGACAAGAGACAAAGTTTTGGTATTCCGGTTTGTCGATGTGGGAAAACTTCCCCCGCCTGTCCTCCAGTTTGTTGAGGTGACATTTGGGTACACACCTGATAATCTGATCTACAAGAACCTTGACTTTGGGGTTGATTTGGACTCCAGGATTGCCCTGGTTGGACCCAATGGAGCTGGGAAGAGTACGTTACTGAAGCTAATGACTCGTGATTTGGAACCTCTAGATGGCATGGTTCGACGCCACAATCACCTTCGAATTGCACAATTTCACCAGCACTTGGCTGAAAAGCTAGACATGGAGTTGTCTGCTCTCCAGTATATGATAAAAGAATACCCTGGAAATGAGGATGAGAGGATGAGAGCAGCCATTGGGAAATTTGGACTGTCAGGTAAAGCCCAGGTGATGCCTATGAAGAATTTATCTGATGGGCAGAGAAGCCGTGTGATATTCGCTTGGTTAGCTTATAGACAGCCTCATCTGCTACTTTTGGATGAGCCAACTAACCATTTGGATATTGAAACAATTGACTCATTGGCTGAGGCATTGAATGAATGGGATGGTGGCATGGTGCTAGTTAGCCATGATTTTAGGCTCATAAATCAGGTGGCCCATGAGATATGGGTGTGTGCTGATCAAGCTGTGACCAGATGGGAAGGTGACATTATGGATTTCAAGGAGCACCTAAGGTCAAAGGCGGGTTTATCTGACTGA 1791 0.459 MVSDASKKKAAQKKAAAAAKRGGKAAVAAAATSSKAAAASDKLADGIGDIHISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGFRELPIPDHMDIYHLTREIEASDMSSLEAVISCDEERLRLEKEAEALAAQDDGGGETLERIYERLEAMDASTAEKRAAEILFGLGFNKQMQAKKTCDFSGGWRMRIALARALFMKPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVVSHSQDFLNGVCTNIIHMQSKKLKLYTGNYDQYVQTRADLEENQMKQYKWEQDQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLAEKVTRDKVLVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRIALVGPNGAGKSTLLKLMTRDLEPLDGMVRRHNHLRIAQFHQHLAEKLDMELSALQYMIKEYPGNEDERMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQAVTRWEGDIMDFKEHLRSKAGLSD 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1096 596 Pfam ABC transporter 281 360 IPR032781 -
Aed1g1096 596 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 596 - -
Aed1g1096 596 ProSitePatterns ABC transporters family signature. 214 228 IPR017871 GO:0005524
Aed1g1096 596 Gene3D - 345 594 IPR027417 -
Aed1g1096 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 305 IPR027417 -
Aed1g1096 596 Gene3D - 70 334 IPR027417 -
Aed1g1096 596 SMART AAA_5 94 296 IPR003593 -
Aed1g1096 596 SMART AAA_5 406 594 IPR003593 -
Aed1g1096 596 CDD ABCF_EF-3 381 572 - -
Aed1g1096 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 575 IPR027417 -
Aed1g1096 596 Pfam ABC transporter 397 528 IPR003439 GO:0005524
Aed1g1096 596 PANTHER - 1 596 - -
Aed1g1096 596 Pfam ABC transporter 88 242 IPR003439 GO:0005524
Aed1g1096 596 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 70 310 IPR003439 GO:0005524
Aed1g1096 596 CDD ABCF_EF-3 70 287 - -
Aed1g1096 596 Coils Coil 288 308 - -
Aed1g1096 596 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 381 596 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1096 Aed-Chr1 10814241 10818848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1096 90 268 Calmodulin-binding Proteins AT2G36910 27.869 2.09e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1096 K06185 - gmx:100785099 1048.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1096 1 10814241 10818848 Aed1g1096 1 10814241 10818848 ECH
Aed1g1096 1 10814241 10818848 Aed5g0564 5 4113962 4117661 PCT