Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1093 ATGGGAAGAGCTCCTTGTTGTGACAAGGCAAGTGTGAAGAGAGGACCATGGTCACCAGAAGAAGACTCAAAGCTGAAGGATTACATAGAGAAGCATGGCACTGGAGGGAATTGGATCGCTCTTCCTCAGAAAGCTGGTCTAAAGAGATGCGGAAAAAGTTGCAGATTGAGATGGCTTAACTATCTTAGGCCTAACATTAAGCACGGAGAATTCTCCGATGAGGAAGACAGAATCATTTGCAGCCTTTATGCTAATATTGGAAGCAGGTGGTCAATTATAGCTGCTCAGTTGCCAGGAAGGACTGACAATGATATAAAGAACTATTGGAACACCAAGCTTAAGAGAAAACTCATGGGGTTGCTTCCTGCATCTCACCAAAGAATAGCACCCTATCAACAATATTCCTCTCCTCAAACCCCTCCATCATTATCATCATTTCCTTCTCACTCATCACTATCATCTTCAATCTACAAGGACTATTACAACAACTCTCATCATTACATCCCAGCACCAACCTCATCATCTTTCATATACCTTGAACCAATTTCTGTTCCTTCAAGTAATTACACAAGCACAGCAGCAACCAGCTCCACCTCTCTCCCTTTTTACCAAGAGCCCCCCTTGGTGAGTGTTGTTAGTCCCATGCATCAGTATTACCCCATCACAGACAGCTCCAATATGCTTGTGTTTGGAAGTGAAACCAGTTGCAGCTCCTCTGATGGGAGCTGCAGCCAGGTTAGCCTTGGCAGAGAGATCAAACAAGAAGACATGGGGTTTCAGAATTTCATGTTTGGAGATCATCAACTCATGAACAAGTTCATGCTTAGTGAAGGCGGCAGCAACACTAATCATGATGGAGGAGGTGAAGAATATGTGAACCAATATTGGACACAGAAGCCAAACGGGTACACTTTTCAAACGCAACAAACTGCATTGGATTATGATCTTGAGGTTATTAAGAACTTGATTAGTAGTAACAGTAGTAATAGTAATAGTAATAATGAGTACTTGAGTATTGATGAAAACAAGACGGAGGAGGAGAAGGGTGTGTACTACAACTACTGA 1065 0.4254 MGRAPCCDKASVKRGPWSPEEDSKLKDYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICSLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKRKLMGLLPASHQRIAPYQQYSSPQTPPSLSSFPSHSSLSSSIYKDYYNNSHHYIPAPTSSSFIYLEPISVPSSNYTSTAATSSTSLPFYQEPPLVSVVSPMHQYYPITDSSNMLVFGSETSCSSSDGSCSQVSLGREIKQEDMGFQNFMFGDHQLMNKFMLSEGGSNTNHDGGGEEYVNQYWTQKPNGYTFQTQQTALDYDLEVIKNLISSNSSNSNSNNEYLSIDENKTEEEKGVYYNY 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1093 354 Gene3D - 70 136 - -
Aed1g1093 354 MobiDBLite consensus disorder prediction 1 20 - -
Aed1g1093 354 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Aed1g1093 354 SMART sant 13 64 IPR001005 -
Aed1g1093 354 SMART sant 67 115 IPR001005 -
Aed1g1093 354 PANTHER TRANSCRIPTION FACTOR RAX3 1 334 - -
Aed1g1093 354 CDD SANT 16 62 IPR001005 -
Aed1g1093 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Aed1g1093 354 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Aed1g1093 354 Gene3D - 7 68 - -
Aed1g1093 354 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Aed1g1093 354 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Aed1g1093 354 CDD SANT 70 113 IPR001005 -
Aed1g1093 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Aed1g1093 354 PANTHER OS09G0431300 PROTEIN 1 334 - -
Aed1g1093 354 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1093 Aed-Chr1 10778337 10779993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1093 1 119 MYB Transcription Factor Family AT5G57620 89.076 9.05e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed1g1093 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1093 K09422 - gmx:100808114 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1093 1 10778337 10779993 Aed1g1093 1 10778337 10779993 ECH
Aed1g1093 1 10778337 10779993 Aed5g0569 5 4155493 4157111 PCT