Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1086 ATGGATGCTCACCAAGACACACTGACATACGCGAATGATTTTGAGCTCTATGATTTCGTTGATGATCCAAATTTTGATCAGTTCATCAATTTGATCCGAGGGGAGAGTGAAGATGCCAACTGTGACCACTTCGGTTCTGACCTTATCAATGATTGCTTTGTTAACAATCAGCTCCTTTCATCATGTCCTGCAAACCCTTTTGATCAGAGCAATATTAATAATAATAATAATAATAATGCTGTGAATGTCTATGGTCCAAGCTCCACATTTAGCTCCTTCTCTTGTTTTGATGGGGAGCTCAAGGGAGAAGAAGAAGAACAGGATGATGGGGAGCATTCTTCTGGAACGACGACGACGACGACAACAACAACAACTAAGAATGGCGATGCCAAACCGAAACTTAAAACTGATAGGTCCAAGACTCTCATTTCAGAGAGGAGGAGGAGAGGCCGAATGAAGGAGAAGCTTTACGCATTGCGTTCTTTGGTTCCCAACATAACAAAGATGGATAAGGCTTCTATAATTGGAGACGCAGTATCATACGTGCATGACCTTCAGGCTCAAGCTAGGAAGCTGAAGGCTGAGGTAGCAGGACTTGAAGCATCCTTATTAGTGTCCGAAAACTATCAAGGATCAATTAGCAATCCCAAAAATTTGCAAGTGTCCAGTATTACTCATCCAATCTGCAGCAAGAAGATCATGCAGGTGGACATGCTTCAAGTGGAGGAAAGAGGGTACTATGCAAAAATAGTGTGTAATAAAGGAGAAGGGGTAGCAGCTTCACTGTACAAGGCTCTTGAGTCTCTTGCAGGTTTTAATGTTCAGAATTCAAACTTGGCTACAGTTGGTGACACTTTTCTACTTACATTTACATTGAATGTAAAAGGGTCTGAACCAGAAATCAACCTGCCAAATTTGAAGCTATGGGTGACTGGGGCTCTTCTGAACCAAGGCTTTGAATTCGTGACATCCTTTCCAGCATGA 984 0.4217 MDAHQDTLTYANDFELYDFVDDPNFDQFINLIRGESEDANCDHFGSDLINDCFVNNQLLSSCPANPFDQSNINNNNNNNAVNVYGPSSTFSSFSCFDGELKGEEEEQDDGEHSSGTTTTTTTTTTKNGDAKPKLKTDRSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQARKLKAEVAGLEASLLVSENYQGSISNPKNLQVSSITHPICSKKIMQVDMLQVEERGYYAKIVCNKGEGVAASLYKALESLAGFNVQNSNLATVGDTFLLTFTLNVKGSEPEINLPNLKLWVTGALLNQGFEFVTSFPA 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1086 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 207 IPR036638 GO:0046983
Aed1g1086 327 SMART finulus 142 191 IPR011598 GO:0046983
Aed1g1086 327 MobiDBLite consensus disorder prediction 101 142 - -
Aed1g1086 327 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 10 323 - -
Aed1g1086 327 CDD bHLH_AtFIT_like 135 210 - -
Aed1g1086 327 Coils Coil 182 202 - -
Aed1g1086 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
Aed1g1086 327 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 10 323 - -
Aed1g1086 327 Gene3D - 128 202 IPR036638 GO:0046983
Aed1g1086 327 MobiDBLite consensus disorder prediction 113 129 - -
Aed1g1086 327 Pfam Helix-loop-helix DNA-binding domain 143 186 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1086 Aed-Chr1 10720197 10721459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1086 1 319 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 51.807 1.75e-101 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed1g1086 HLH 3.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1086 - - gmx:100805451 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1086 1 10720197 10721459 Aed1g1086 1 10720197 10721459 ECH
Aed1g1086 1 10720197 10721459 Aed5g0582 5 4243908 4245259 PCT