Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1083 ATGCTGTCAGAAATGGACATGGAGGAACTTGTTTCATGTAACAACAACGATGCCACCAACATAGCCAAAGGCAAGCGCACAAATCTAAAGCGCCGCCTCAGGCCTTTGTCGCCTTGTGATGTTGTTACTGCCACCGCCACCACCTCTGTAGTTGCTATCACTACTGCTGTCGTCGCATCAAGCTGTTCAAGTGCTTCTGGTGGCGGCGGCGGTGGATCTTTTTCATCCACCACCTTTGAGGAGGAAGAGGAAGACATGGCCAACTGTTTGATTCTGCTCGCACAAGGAAAAGTGGGAGAGTACCCTCCTCATCATCATCACAAGGACCTATGTGGTGCGGAGAAGGGTAGCACCAAAGTTGATTTCTATGTTTATGAGTGCAAAACATGCAACCGAACATTCCCTTCTTTTCAAGCACTGGGTGGCCACAGGGCAAGTCACAAGAAGCCCAAGGTGGAGGAGAAAAAGTCATCGTCTCCATCACCGTCTCCGCCACCACGGTCTTTGCCGCCACCGCCACCACGACCAGCATCGTCACCACTATTTCATTTTGAAGAAGCAAAACAAAGTCACATGAAGATTATCAACCCTTCTGTTTCTCTTCAACTAGGGTGTGGCAACAACAACAAGGTTGGTTTGAATTTCCATGGCAACAAGTCCAAGATTCATGAGTGTTCCATCTGTGGGTCGGAATTCACATCAGGGCAAGCATTGGGTGGTCACATGAGGAGGCATAGAGCATCTAACAATAATAACAATATTGTTCAGACAACAACAGCAATTTCTGATATTGGTGCTGTTGATGTTAAGCCTCGGAATGTTCTAGAATTGGATCTCAACCTTCCGGCGCCGGAGGACGATCTCCGGGACTCGAAGTTTCAGTTTCCGGCGAATCAGAATTCGATGATGCTGTCGGCTGCTCCGGCTTTGGTGGGATGCCATTATTAG 948 0.4852 MLSEMDMEELVSCNNNDATNIAKGKRTNLKRRLRPLSPCDVVTATATTSVVAITTAVVASSCSSASGGGGGGSFSSTTFEEEEEDMANCLILLAQGKVGEYPPHHHHKDLCGAEKGSTKVDFYVYECKTCNRTFPSFQALGGHRASHKKPKVEEKKSSSPSPSPPPRSLPPPPPRPASSPLFHFEEAKQSHMKIINPSVSLQLGCGNNNKVGLNFHGNKSKIHECSICGSEFTSGQALGGHMRRHRASNNNNNIVQTTTAISDIGAVDVKPRNVLELDLNLPAPEDDLRDSKFQFPANQNSMMLSAAPALVGCHY 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1083 315 MobiDBLite consensus disorder prediction 159 179 - -
Aed1g1083 315 PANTHER ZINC FINGER PROTEIN ZAT5 1 315 - -
Aed1g1083 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 125 152 IPR013087 -
Aed1g1083 315 SMART c2h2final6 223 245 IPR013087 -
Aed1g1083 315 SMART c2h2final6 125 147 IPR013087 -
Aed1g1083 315 MobiDBLite consensus disorder prediction 141 181 - -
Aed1g1083 315 Pfam C2H2-type zinc finger 223 247 - -
Aed1g1083 315 Pfam C2H2-type zinc finger 124 150 - -
Aed1g1083 315 ProSitePatterns Zinc finger C2H2 type domain signature. 225 245 IPR013087 -
Aed1g1083 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 223 250 IPR013087 -
Aed1g1083 315 Gene3D Classic Zinc Finger 209 272 - -
Aed1g1083 315 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 315 - -
Aed1g1083 315 SUPERFAMILY beta-beta-alpha zinc fingers 124 245 IPR036236 -
Aed1g1083 315 ProSitePatterns Zinc finger C2H2 type domain signature. 127 147 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1083 Aed-Chr1 10699725 10700672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1083 16 315 C2H2 Transcription Factor Family AT2G28200 42.222 2.75e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed1g1083 zf-C2H2_6 2.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1083 - - gmx:100788646 411.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1083 1 10699725 10700672 Aed1g1083 1 10699725 10700672 ECH
Aed1g1083 1 10699725 10700672 Aed1g2622 1 21830526 21831593 ECH
Aed8g0459 8 3879839 3880699 Aed1g1083 1 10699725 10700672 ECH
Aed2g1895 2 23578433 23579314 Aed1g1083 1 10699725 10700672 ECH
Aed1g1083 1 10699725 10700672 Aed5g0584 5 4259369 4260262 PCT